Cocaine use disorder white matter DTI (ds003599)
White matter deficits in cocaine use disorder V1.0
Diffusion MRI of adults in inpatient treatment for crack-cocaine use disorder and of healthy controls from southern Brazil, collected to study white matter damage in men and women. 133 subjects, released on OpenNeuro under CC0.
Overview
This OpenNeuro release (ds003599) holds the diffusion MRI from a case-control study of white matter in cocaine use disorder (CUD), run by the Developmental Cognitive Neuroscience Lab at PUCRS in Porto Alegre, Brazil. The study included women as well as men because earlier diffusion work on cocaine users was mostly male. The authors published the analysis, together with a separate post-mortem proteomics arm, in Translational Psychiatry in 2021. The images were released under a CC0 waiver in April 2021.
Composition
Snapshot 1.0.0 has 133 subject folders, each with one diffusion-weighted NIfTI volume and its bval and bvec files. According to the paper, 75 subjects were crack-cocaine users scanned two weeks into inpatient detoxification, with negative urine drug tests on the scan day, and 58 were drug-free controls recruited by advertising. 37 of the users and 21 of the controls were men. Users were on average older (32.9 vs 28.0 years) and had fewer years of education. The release contains no participants table, so group, sex and age cannot be linked to individual subjects from the published files.
Acquisition
All scans come from one 3T GE Signa scanner with an eight-channel head coil at the Brain Institute of Rio Grande do Sul. Diffusion imaging used single-shot spin-echo EPI in the axial plane with one b = 0 image and 33 gradient directions at b = 750 s/mm² (TR 13 s, TE 81.1 ms, 2.4 mm slices without gap, 120×120 matrix). The bval files in the release match this scheme. The paper also describes a 1 mm T1-weighted scan, but no T1-weighted images are part of the release.
Annotations
There are no image annotations. Cocaine use disorder and other substance use disorders were assessed with the SCID-I interview, and drug use severity with the ASI-6; these clinical data are reported only in aggregate in the paper.
Known limitations
- No participants file, no JSON sidecars and no README are included, so the per-subject diagnosis and demographics are missing.
- Only diffusion data were shared; the anatomical scans used for tractography are not available.
- Groups differ in age and education, and the CUD group has high rates of tobacco, cannabis and alcohol use disorders.
Cohort
Aggregate numbers from the sources below. Bars are relative to the 133 subjects.
Condition
Groups can overlap
- Cocaine use disorder 75 56%Age mean 32.9
- Healthy control 58 44%Age mean 28
Contrast / sequence
Groups can overlap
- Diffusion-weighted 133 100%
sub-*/dwi in File tree and bval files of ds003599 snapshot 1.0.0 (CC0), subject folders with a dwi NIfTI file
Condition by sex
Reported cross table. A dot marks a cell the source does not give.
| Female | Male | |
|---|---|---|
| Cocaine use disorder | 38 | 37 |
| Healthy control | 37 | 21 |
Contrast combinations
How many subjects have exactly each set of contrasts.
| dwi | Subjects with exactly this set |
|---|---|
133 |
sub-*/dwi in File tree and bval files of ds003599 snapshot 1.0.0 (CC0), subject folders with a dwi NIfTI file
License and access
Our reading of the license, not legal advice. Before you use the data, read the original license and confirm that your use is allowed. We take no responsibility for how you use a dataset. Full disclaimer
Download without an account
Creative Commons Zero 1.0 Universal
Public domain dedication. Do anything with the data, including commercial use, without asking and without having to give credit.
dataset_description.json of snapshot 1.0.0 states "License" as "CC0".
What you can do
- Yes
- Yes
- Yes
- Yes
- Yes
What you can share
- Yes
- Yes
- Yes
What you must do
- No
- Share alike No
- No
- No
- Manuscript review No
- Release code No
- Return results No
- Delete after use No
Limits
- No
- Location limits No
Citation
Tondo LP, Viola TW, Fries GR, et al. White matter deficits in cocaine use disorder: convergent evidence from in vivo diffusion tensor imaging and ex vivo proteomic analysis. Translational Psychiatry 11, 252 (2021). https://doi.org/10.1038/s41398-021-01367-x
Sources
Every number on this page comes from one of these documents. Each chart names the table or page it is taken from. The raw numbers are in stats.csv.
- Tondo et al. 2021, White matter deficits in cocaine use disorder: convergent evidence from in vivo diffusion tensor imaging and ex vivo proteomic analysis, Translational Psychiatry paper
- Tondo et al. 2021, Supplemental Methods (MOESM1) paper
- OpenNeuro ds003599 snapshot 1.0.0 (dataset_description.json and snapshot summary) website
- File tree and bval files of ds003599 snapshot 1.0.0 (CC0), subject folders with a dwi NIfTI file computed