UCLA CNP (ds000030)
UCLA Consortium for Neuropsychiatric Phenomics LA5c Study
Brain MRI of healthy adults and people with schizophrenia, bipolar disorder or ADHD, from a study of memory and response inhibition across diagnoses, now a common benchmark for transdiagnostic psychiatry and fMRI pipelines. 272 adults from Los Angeles with structural, diffusion and task fMRI, under CC0.
Overview
The Consortium for Neuropsychiatric Phenomics (CNP) at UCLA studied memory and response inhibition across healthy adults and several psychiatric diagnoses. Its imaging arm, the LA5c study, was released on OpenfMRI in 2016 and now lives on OpenNeuro as ds000030 under a CC0 waiver. It is a common benchmark for transdiagnostic psychiatry, fMRI preprocessing pipelines and MRI quality control.
Composition
The current snapshot (1.0.0, April 2020) holds 272 participants aged 21 to 50: 130 healthy controls, 50 people with schizophrenia, 49 with bipolar disorder and 43 with adult ADHD. Each person was scanned in two one-hour sessions. One session included an MPRAGE T1-weighted scan, 64-direction diffusion imaging, a balloon analog risk task and a paired-associate memory task; the other included resting-state fMRI, breath holding, stop-signal, spatial working memory and task-switching runs. Not every participant completed every scan; the participants table flags which ones are present. Extensive neuropsychological test results are in the phenotype folder.
Acquisition
All data come from two 3T Siemens Trio scanners at UCLA (Ahmanson-Lovelace Brain Mapping Center and Staglin Center). Functional runs used a 2 s TR echo-planar sequence with 4 mm slices. A matched-bandwidth T2-weighted scan was collected but is not part of the release. Anatomical images were defaced with mri_deface before sharing, and the data are organized in BIDS.
Annotations
Diagnoses were made with the SCID for DSM-IV and an adult ADHD interview. There are no image annotations. The release includes MRIQC quality metrics, diffusion quality ratings and a flag for a ghosting artifact; FreeSurfer and fMRIPrep derivatives were published separately (Gorgolewski et al. 2017).
Known limitations
- Inclusion was restricted by ethnicity (White non-Hispanic, or Hispanic/Latino) and to right-handed adults.
- The OpenNeuro description text gives older group sizes (138, 58, 49, 45) than the participants table and paper.
- The diffusion data of many subjects are affected by a vibration artifact of the Trio scanners of that era.
- Patients could stay on stable medication, which confounds group comparisons.
Cohort
Aggregate numbers from the sources below. Bars are relative to the 272 subjects.
Sex
- Female 117 43%
- Male 155 57%
From participants.tsv of ds000030 (CC0), counted per row; contrasts from its T1w, dwi and task columns
Contrast / sequence
Groups can overlap
- BOLD fMRI 272 100%
- T1-weighted 265 97%
- Diffusion-weighted 262 96%
From participants.tsv of ds000030 (CC0), counted per row; contrasts from its T1w, dwi and task columns
Condition by sex
Reported cross table. A dot marks a cell the source does not give.
| Female | Male | |
|---|---|---|
| Healthy control | 62 | 68 |
| Schizophrenia | 12 | 38 |
| Bipolar disorder | 21 | 28 |
| ADHD | 22 | 21 |
From participants.tsv of ds000030 (CC0), counted per row; contrasts from its T1w, dwi and task columns
Age
mean 33.2 ± 9.4, median 31, range 21 to 50
From participants.tsv of ds000030 (CC0), counted per row; contrasts from its T1w, dwi and task columns
Condition
Groups can overlap
- Healthy control 130 48%
- Schizophrenia 50 18%
- Bipolar disorder 49 18%
- ADHD 43 16%
From participants.tsv of ds000030 (CC0), counted per row; contrasts from its T1w, dwi and task columns
Age by sex
Reported cross table. Missing cells were not published (fewer than 10 or not reported).
- 3140-4949
- 2730-3935
- 5520-2968
From participants.tsv of ds000030 (CC0), counted per row; contrasts from its T1w, dwi and task columns
Contrast combinations
How many subjects have exactly each set of contrasts.
| T1w | dwi | bold | Subjects with exactly this set |
|---|---|---|---|
262 | |||
7 | |||
3 |
From participants.tsv of ds000030 (CC0), counted per row; contrasts from its T1w, dwi and task columns
Age by condition
Reported cross table. A dot marks a cell the source does not give.
| Healthy control | Schizophrenia | Bipolar disorder | ADHD | |
|---|---|---|---|---|
| 20-29 | 72 | 14 | 16 | 21 |
| 30-39 | 27 | 13 | 14 | · |
| 40-49 | 30 | 23 | 17 | 10 |
From participants.tsv of ds000030 (CC0), counted per row; contrasts from its T1w, dwi and task columns
License and access
Our reading of the license, not legal advice. Before you use the data, read the original license and confirm that your use is allowed. We take no responsibility for how you use a dataset. Full disclaimer
Download without an account
Creative Commons Zero 1.0 Universal
Public domain dedication. Do anything with the data, including commercial use, without asking and without having to give credit.
dataset_description.json of snapshot 1.0.0 states "License" CC0.
What you can do
- Yes
- Yes
- Yes
- Yes
- Yes
What you can share
- Yes
- Yes
- Yes
What you must do
- No
- Share alike No
- No
- No
- Manuscript review No
- Release code No
- Return results No
- Delete after use No
Limits
- No
- Location limits No
Citation
Poldrack RA, et al. A phenome-wide examination of neural and cognitive function. Scientific Data 3, 160110 (2016). doi:10.1038/sdata.2016.110. For derived data also cite Gorgolewski KJ, et al. F1000Research 6:1262 (2017).
Sources
Every number on this page comes from one of these documents. Each chart names the table or page it is taken from. The raw numbers are in stats.csv.