Adolescent Brain Development (Calgary)
Adolescent Brain Development
Longitudinal multimodal brain MRI of typically developing children and adolescents, scanned up to three times two years apart to study white matter development and its links to reading and cognition. Diffusion, myelin-sensitive ihMT and mcDESPOT, QSM, ASL and resting-state fMRI from 51 children, in BIDS.
Overview
The Developmental Neuroimaging Lab at the University of Calgary followed healthy school-age children with repeated multimodal MRI between 2014 and 2020 to study how white matter matures through late childhood and adolescence and whether its microstructure relates to reading and other cognitive skills. The BIDS release on the Canadian Open Neuroscience Platform (CONP) is version 1.0, licensed under PDDL, and its files download over HTTPS without an account. Its reference paper, Geeraert et al. 2020, analyzed 46 participants aged 6 to 16.
Composition
The README lists 51 children: 16 with one visit, 23 with two and 12 with three. The file tree has 96 sessions with images; participants.tsv has 99 rows, including one child without any image files. Among the 51 imaged children, 24 are female and 27 male. Children were 6 to 13 years old at enrollment and 6 to 17 years old across all sessions; the mean age at the first session is 10.2 years. Every child has T1-weighted images, two diffusion shells (b=900 and b=2000), multi-echo gradient echo images acquired for quantitative susceptibility mapping (QSM) and inhomogeneous magnetization transfer (ihMT) images. T2-weighted, resting-state fMRI, arterial spin labeling and mcDESPOT data cover 42 to 47 children. Cognitive scores from WASI-II, NEPSY-II and WIAT-III subtests are not part of the download and can be requested by email.
Acquisition
All scans come from one GE 3T Discovery MR750w at the Alberta Children's Hospital with a 32-channel head coil. Children were invited back about two years after each visit with the same protocol; some returned a third time while the study was still recruiting. The raw ihMT images come with derived MTR, ihMTR, qMT and qihMT maps, and the raw ASL series with cerebral blood flow maps. The QSM series are raw echoes, not susceptibility maps.
Known limitations
Children with preterm or complicated births, developmental or psychiatric diagnoses or prior neurosurgery were excluded. The README warns that the b-values and gradient tables written by dcm2nii are wrong and that the corrected tables in the top-level folder must be used instead. Three session rows in participants.tsv have no image files, one of them the only visit of a child. The CONP DATS.json lists its privacy as "registered" while marking the distribution itself as public.
Cohort
Aggregate numbers from the sources below. Bars are relative to the 51 subjects.
Sex
- Female 24 47%
- Male 27 53%
Contrast / sequence
Groups can overlap
- T1-weighted 51 100%
- Diffusion-weighted 51 100%
- T2*-weighted 51 100%
- Inhomogeneous magnetization transfer 51 100%
- T2-weighted 47 92%
- BOLD fMRI 46 90%
- Variable flip angle 43 84%
- Arterial spin labeling 42 82%
anat/*_T1w.nii.gz, anat/*_T2w.nii.gz, dwi/*_dwi.nii.gz, func/*_task-rest_fMRI.nii.gz, perf/*_ASL.nii.gz, anat/*_QSM.nii.gz, anat/*_ihMT.nii.gz, anat/*_acq-MCDESPOT_*.nii.gz in File listing of the CONP BIDS repository (PDDL), subjects and sessions counted per NIfTI file type
Country
- Canada 51 100%
README: Overview in CONP repository of the Adolescent Brain Development dataset (README, DATS.json, dataset_description.json)
Age
Studiesmean 10.2 ± 2.4, median 9.9, range 6 to 17.7
Scanner vendor
- GE HealthCare 51 100%
README: Data acquisition in CONP repository of the Adolescent Brain Development dataset (README, DATS.json, dataset_description.json)
Field strength
- 3 T 51 100%
README: Data acquisition in CONP repository of the Adolescent Brain Development dataset (README, DATS.json, dataset_description.json)
Contrast combinations
How many subjects have exactly each set of contrasts.
| T1w | T2w | T2starw | ihMTw | VFA | dwi | bold | asl | Subjects with exactly this set |
|---|---|---|---|---|---|---|---|---|
37 | ||||||||
5 | ||||||||
3 | ||||||||
2 | ||||||||
2 | ||||||||
1 | ||||||||
1 |
From File listing of the CONP BIDS repository (PDDL), subjects and sessions counted per NIfTI file type
License and access
Our reading of the license, not legal advice. Before you use the data, read the original license and confirm that your use is allowed. We take no responsibility for how you use a dataset. Full disclaimer
Download without an account
Open Data Commons Public Domain Dedication and License v1.0
Public domain dedication for databases and their contents. Use, change and share the data for any purpose, including commercial use, without having to give credit.
dataset_description.json and the CONP DATS.json both name PDDL. The files are served over HTTPS from sftp.conp.ca without an account; DATS.json marks the distribution as public.
What you can do
- Yes
- Yes
- Yes
- Yes
- Yes
What you can share
- Yes
- Yes
- Yes
What you must do
- No
- Share alike No
- No
- No
- Manuscript review No
- Release code No
- Return results No
- Delete after use No
Limits
- No
- Location limits No
Citation
Geeraert BL, Chamberland M, Lebel RM, Lebel C. Multimodal principal component analysis to identify major features of white matter structure and links to reading. PLOS ONE 15(8), e0233244 (2020). doi:10.1371/journal.pone.0233244
Sources
Every number on this page comes from one of these documents. Each chart names the table or page it is taken from. The raw numbers are in stats.csv.
- CONP repository of the Adolescent Brain Development dataset (README, DATS.json, dataset_description.json) website
- Geeraert et al. 2020, Multimodal principal component analysis to identify major features of white matter structure and links to reading, PLOS ONE paper
- participants.tsv of the CONP release (PDDL), one row per session with age in days and sex; restricted to the 96 sessions that have image files computed
- File listing of the CONP BIDS repository (PDDL), subjects and sessions counted per NIfTI file type computed