Calgary Preschool MRI
Calgary Preschool MRI Dataset
Longitudinal brain MRI of typically developing young children, followed from age 2 into the early school years to chart brain development and its links to cognition. Structural, diffusion, perfusion and resting-state fMRI from 143 children over 679 sessions, in BIDS.
Overview
The Developmental Neuroimaging Lab at the University of Calgary scanned young children from the Calgary area again and again between 2013 and 2024 to describe how the brain develops in early childhood and how that relates to cognitive and behavioral development. A first release of T1-weighted, diffusion, perfusion and resting-state fMRI data was published on OSF and described in a 2020 data descriptor. The current BIDS release on the Canadian Open Neuroscience Platform (CONP) extends and replaces it, and the files are downloadable from OSF without an account.
Composition
Release 1.0 holds 143 children (72 girls, 71 boys) with 679 scan sessions; each child has between 1 and 27 sessions in participants.tsv. Ages range from about 2 to 13 years, and the mean age at the first session is 4.0 years. All children have T1-weighted and diffusion scans, 142 have T2-weighted images, 140 have arterial spin labeling and 126 have resting-state fMRI. Diffusion data were taken at b=750 for every child and at b=2000 for 111 children. Inhomogeneous magnetization transfer (ihMT) images are included for part of the cohort. participants.tsv adds sex, age, household income, caregiver education and handedness for every session. NEPSY-II, Woodcock-Johnson IV and parent questionnaire scores are not in the download and are available by email.
Acquisition
Every scan was done on the same GE 3T Discovery MR750w with a 32-channel head coil at the Alberta Children's Hospital. Children were not sedated and either watched a movie or slept. The earlier release used a BRAVO T1-weighted sequence, pseudo-continuous 3D ASL, single-shot spin-echo EPI diffusion with 30 directions and passive-viewing EPI fMRI. Children were first invited back every six months and later once a year.
Known limitations
Recruitment excluded complicated or premature births, diagnosed developmental or psychiatric conditions and prior neurosurgery, yet participants.tsv flags a developmental disorder at some session for 21 children. Not every session contains every sequence, because of time limits and motion. The descriptor of the first release reports 126 children and 431 sessions, so its numbers do not match the current release. The BIDS dataset_description.json names PDDL as license while the OSF project and the CONP metadata state CC BY 4.0.
Cohort
Aggregate numbers from the sources below. Bars are relative to the 143 subjects.
Sex
- Female 72 50%
- Male 71 50%
Contrast / sequence
Groups can overlap
- T1-weighted 143 100%
- Diffusion-weighted 143 100%
- T2-weighted 142 99%
- Arterial spin labeling 140 98%
- BOLD fMRI 126 88%
anat/*_T1w.nii.gz, anat/*_T2w.nii.gz, dwi/*_dwi.nii.gz, func/*_bold.nii.gz, perf/*_asl.nii.gz in File listing of the CONP BIDS repository (CC BY 4.0), subjects and sessions counted per T1w, T2w, dwi, bold and asl NIfTI file
Field strength
- 3 T 143 100%
README: Data acquisition in CONP repository of the Calgary Preschool MRI Dataset (README, DATS.json, dataset_description.json)
Age
Studiesmean 4 ± 1.2, range 2 to 13
Scanner vendor
- GE HealthCare 143 100%
README: Data acquisition in CONP repository of the Calgary Preschool MRI Dataset (README, DATS.json, dataset_description.json)
Country
- Canada 143 100%
README: Overview in CONP repository of the Calgary Preschool MRI Dataset (README, DATS.json, dataset_description.json)
Contrast combinations
How many subjects have exactly each set of contrasts.
| T1w | T2w | dwi | bold | asl | Subjects with exactly this set |
|---|---|---|---|---|---|
126 | |||||
14 | |||||
2 | |||||
1 |
License and access
Our reading of the license, not legal advice. Before you use the data, read the original license and confirm that your use is allowed. We take no responsibility for how you use a dataset. Full disclaimer
Download without an account
Creative Commons Attribution 4.0 International
Use, share and adapt the data for any purpose, including commercial use, as long as you credit the creators.
The OSF project that hosts the files and the CONP DATS.json both state CC BY 4.0. The dataset_description.json of the BIDS release lists "PDDL" instead.
What you can do
- Yes
- Yes
- Yes
- Yes
- Yes
What you can share
- Yes
- Yes
- Yes
What you must do
- Yes
- Share alike No
- No
- No
- Manuscript review No
- Release code No
- Return results No
- Delete after use No
Limits
- No
- Location limits No
Citation
Reynolds JE, Long X, Paniukov D, Bagshawe M, Lebel C. Calgary Preschool magnetic resonance imaging (MRI) dataset. Data in Brief 29, 105224 (2020). doi:10.1016/j.dib.2020.105224
Sources
Every number on this page comes from one of these documents. Each chart names the table or page it is taken from. The raw numbers are in stats.csv.
- Reynolds et al. 2020, Calgary Preschool magnetic resonance imaging (MRI) dataset, Data in Brief (PMC full text) paper
- CONP repository of the Calgary Preschool MRI Dataset (README, DATS.json, dataset_description.json) website
- participants.tsv of the CONP release (CC BY 4.0), one row per session; sex per participant, age column in years computed
- File listing of the CONP BIDS repository (CC BY 4.0), subjects and sessions counted per T1w, T2w, dwi, bold and asl NIfTI file computed