Thalamocortical Hierarchical Cognitive Control
Thalamocortical contributions to hierarchical cognitive control
Brain MRI and task fMRI of healthy young adults performing a hierarchical context-switching task, collected to study how the thalamus represents and updates task context. Covers 59 participants with eight task runs each.
Overview
This OpenNeuro release (ds005600) holds the raw MRI data of a University of Iowa study on the role of the thalamus in hierarchical cognitive control. Healthy adults performed a task in which a context cue decided which of several response rules applied, so they had to keep track of the current context and switch between contexts. The authors used evoked responses, decoding and a thalamocortical activity flow model to show that thalamic nuclei encode task context and help shape context-related cortical activity. The data are shared under a CC0 waiver.
Composition
The release contains 59 right-handed adults (44 women, 15 men) with a mean age of 22.3 years and no reported neurological history. They are what remained of 74 participants after exclusions for low task accuracy, equipment failure, dropout and head motion. Each participant has one T1-weighted image, eight task fMRI runs with event files and spin-echo EPI fieldmaps with opposite phase encoding. There is no participants table, so age and sex per subject are not part of the release.
Acquisition
Scans were acquired on a 3T GE SIGNA Premier scanner with a 48-channel head coil at the Magnetic Resonance Research Facility of the University of Iowa. The structural image is a 3D MPRAGE with 1 mm isotropic voxels. Functional runs use gradient-echo EPI with a repetition time of 1.8 s, an echo time of 30 ms and 2.5 mm voxels. Each run lasts about nine minutes and contains 51 trials.
Known limitations
- Single site and scanner, and a sample of young, mostly female adults.
- Only participants who passed the accuracy and motion criteria are included.
- The dataset metadata still carries placeholder text for funding and the full task name.
- The release holds only the 59 healthy participants analysed in the paper.
Cohort
Aggregate numbers from the sources below. Bars are relative to the 59 subjects.
Sex
- Female 44 75%
- Male 15 25%
Materials and methods: Participants in Chen et al. 2024, The thalamus encodes and updates context representations during hierarchical cognitive control, PLoS Biology
Condition
Groups can overlap
- Healthy control 59 100%
Materials and methods: Participants in Chen et al. 2024, The thalamus encodes and updates context representations during hierarchical cognitive control, PLoS Biology
Scanner vendor
- GE HealthCare 59 100%
Materials and methods: MRI data acquisition in Chen et al. 2024, The thalamus encodes and updates context representations during hierarchical cognitive control, PLoS Biology
Country
- United States 59 100%
Materials and methods: MRI data acquisition in Chen et al. 2024, The thalamus encodes and updates context representations during hierarchical cognitive control, PLoS Biology
Age
mean 22.3
No age bins reported.
Materials and methods: Participants in Chen et al. 2024, The thalamus encodes and updates context representations during hierarchical cognitive control, PLoS Biology
Contrast / sequence
Groups can overlap
- T1-weighted 59 100%
- BOLD fMRI 59 100%
sub-*/anat/*_T1w.nii.gz, sub-*/func/*_bold.nii.gz in File tree of ds005600 snapshot 1.1.0 (CC0), NIfTI files under sub-*/ counted per suffix
Field strength
- 3 T 59 100%
Materials and methods: MRI data acquisition in Chen et al. 2024, The thalamus encodes and updates context representations during hierarchical cognitive control, PLoS Biology
Contrast combinations
How many subjects have exactly each set of contrasts.
| T1w | bold | Subjects with exactly this set |
|---|---|---|
59 |
sub-*/ in File tree of ds005600 snapshot 1.1.0 (CC0), NIfTI files under sub-*/ counted per suffix
License and access
Our reading of the license, not legal advice. Before you use the data, read the original license and confirm that your use is allowed. We take no responsibility for how you use a dataset. Full disclaimer
Download without an account
Creative Commons Zero 1.0 Universal
Public domain dedication. Do anything with the data, including commercial use, without asking and without having to give credit.
dataset_description.json of snapshot 1.1.0 states "License" CC0.
What you can do
- Yes
- Yes
- Yes
- Yes
- Yes
What you can share
- Yes
- Yes
- Yes
What you must do
- No
- Share alike No
- No
- No
- Manuscript review No
- Release code No
- Return results No
- Delete after use No
Limits
- No
- Location limits No
Citation
Chen X, Leach SC, Hollis J, Cellier D, Hwang K. The thalamus encodes and updates context representations during hierarchical cognitive control. PLoS Biology 22(12), e3002937 (2024). doi:10.1371/journal.pbio.3002937
Sources
Every number on this page comes from one of these documents. Each chart names the table or page it is taken from. The raw numbers are in stats.csv.
- Chen et al. 2024, The thalamus encodes and updates context representations during hierarchical cognitive control, PLoS Biology paper
- OpenNeuro ds005600 snapshot 1.1.0 (dataset_description.json, README, CHANGES, sidecars and snapshot size) website
- File tree of ds005600 snapshot 1.1.0 (CC0), NIfTI files under sub-*/ counted per suffix computed