PTBP
Pediatric Template of Brain Perfusion
Brain MRI of 120 typically developing children aged 7 to 18 from UCLA, partly longitudinal (183 sessions), with T1w, pCASL perfusion, 30-direction DTI and resting-state BOLD, plus a population template and IQ and socioeconomic measures, under CC BY 4.0.
Overview
The Pediatric Template of Brain Perfusion (PTBP) is an openly shared multimodal MRI collection of typically developing children and adolescents, built to chart how brain structure, white matter, resting-state connectivity and cerebral blood flow change between late childhood and adolescence. It was collected by the Laboratory of Functional MRI Technology at UCLA and processed with ANTs and ANTsR by collaborators at the University of Pennsylvania and the University of Virginia.
Composition
120 children aged 7 to 18 at the first visit, 61 girls and 59 boys, contributed 183 imaging sessions. Most children were scanned once; the rest returned for up to four sessions. Each session can contain a T1-weighted MPRAGE, a pseudo-continuous ASL series with its mean CBF map, a diffusion scan and a resting-state BOLD run. Not every session has every modality, and the data index file records which images exist per session. Besides the subject images, the release contains a population T1 template with tissue priors and AAL labels, group-average CBF, BOLD and diffusion tensor images, a copy of the template in MNI space, and a spreadsheet with age, sex, handedness, WASI IQ scores, family income, parental education, Ladder SES scores and regional thickness, FA, CBF and connectivity summaries.
Acquisition
All scans come from one Siemens 3T TIM Trio with a 12-channel head coil at the Ahmanson-Lovelace Brain Mapping Center between January 2010 and February 2014. The protocol was a 1 mm isotropic MPRAGE, pCASL with 40 label/control pairs (labeling duration 1.5 s, post-labeling delay 1.2 s), single-shell DTI with 30 directions at b=1000 and one b=0 volume, and an eyes-open resting BOLD run of up to 244 volumes at 4 mm.
Known limitations
- Single site and single scanner, so there is no scanner variability to learn from.
- Recruitment excluded children with diagnosed developmental, neurological, psychiatric or learning disorders, so the cohort covers healthy development only.
- Some sessions lack DTI, CBF or BOLD data, either because they were not acquired or because quality was insufficient. The authors used 91 subjects with complete, usable data in their own analyses.
- The paper does not state whether faces were removed from the T1-weighted images.
Cohort
Aggregate numbers from the sources below. Bars are relative to the 120 subjects.
Sex
- Female 61 51%
- Male 59 49%
Age
mean 12.4± 3.12 · range 7 to 18Age by sex
Reported cross table. Missing cells were not published (fewer than 10 subjects or not reported).
- 1316-1810
- 1713-1517
- 1310-1218
- 187-914
Contrast combinations
How many subjects have exactly each set of contrasts.
| T1w | dwi | bold | asl | Subjects with exactly this set |
|---|---|---|---|---|
108 | ||||
7 | ||||
3 | ||||
1 | ||||
1 |
Contrast / sequence
subjects, values can overlap
- Arterial spin labeling 120 100%
- T1-weighted 119 99%
- Diffusion-weighted 115 96%
- BOLD fMRI 110 92%
License and access
Our reading of the license, not legal advice. Before you use the data, read the original license and confirm that your use is allowed. We take no responsibility for how you use a dataset. Full disclaimer
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Creative Commons Attribution 4.0 International
Use, share and adapt the data for any purpose, including commercial use, as long as you credit the creators.
Both figshare records (the template and summary files, 10.6084/m9.figshare.923555, and the subject images, 10.6084/m9.figshare.1190933) state CC BY 4.0.
What you can do
- Yes
- Yes
- Yes
- Yes
What you can share
- Yes
- Yes
- Yes
What you must do
- Yes
- Share alike No
- No
- No
- Manuscript review No
- Release code No
- Return results No
- Delete after use No
Limits
- No
- Location limits No
Citation
Avants BB, Duda JT, Kilroy E, Krasileva K, Jann K, Kandel BT, Tustison NJ, Yan L, Jog M, Smith R, Wang Y, Dapretto M, Wang DJJ. The pediatric template of brain perfusion. Scientific Data 2, 150003 (2015). doi:10.1038/sdata.2015.3
All numbers
Every number on this page, as stored in stats.csv, with its source.
| Measure | Breakdown | Value | Source |
|---|---|---|---|
| Subjects | total ptbp_data_index.csv also lists 120 subject ids | 120 | avants2015 Abstract |
| Studies | total ptbp_data_index.csv also lists 183 sessions | 183 | avants2015 Imaging data collection summary |
| Subjects | sex=female | 61 | avants2015 Figure 2 caption |
| Subjects | sex=male | 59 | avants2015 Figure 2 caption |
| Mean age | total | 12.4 | avants2015 Figure 2 caption |
| Age SD | total | 3.1 | avants2015 Figure 2 caption |
| Minimum age | total age at first scan | 7 | ptbp-demographics AgeAtScan |
| Maximum age | total age at first scan | 18 | ptbp-demographics AgeAtScan |
| Median age | total age at first scan | 12.8 | ptbp-demographics AgeAtScan |
| Subjects | age=7-9 age at first scan | 32 | ptbp-demographics AgeAtScan |
| Subjects | age=10-12 age at first scan | 31 | ptbp-demographics AgeAtScan |
| Subjects | age=13-15 age at first scan | 34 | ptbp-demographics AgeAtScan |
| Subjects | age=16-18 age at first scan | 23 | ptbp-demographics AgeAtScan |
| Subjects | sex=female;age=7-9 age at first scan | 18 | ptbp-demographics AgeAtScan, Sex |
| Subjects | sex=male;age=7-9 age at first scan | 14 | ptbp-demographics AgeAtScan, Sex |
| Subjects | sex=female;age=10-12 age at first scan | 13 | ptbp-demographics AgeAtScan, Sex |
| Subjects | sex=male;age=10-12 age at first scan | 18 | ptbp-demographics AgeAtScan, Sex |
| Subjects | sex=female;age=13-15 age at first scan | 17 | ptbp-demographics AgeAtScan, Sex |
| Subjects | sex=male;age=13-15 age at first scan | 17 | ptbp-demographics AgeAtScan, Sex |
| Subjects | sex=female;age=16-18 age at first scan | 13 | ptbp-demographics AgeAtScan, Sex |
| Subjects | sex=male;age=16-18 age at first scan | 10 | ptbp-demographics AgeAtScan, Sex |
| Subjects | contrast=T1w in at least one session | 119 | ptbp-data-index Anatomy |
| Subjects | contrast=asl in at least one session | 120 | ptbp-data-index PCASL |
| Subjects | contrast=dwi in at least one session | 115 | ptbp-data-index DWI |
| Subjects | contrast=bold in at least one session | 110 | ptbp-data-index BOLD |
| Subjects | contrast_set=asl+bold+dwi+T1w union over sessions | 108 | ptbp-data-index Anatomy, PCASL, DWI, BOLD |
| Subjects | contrast_set=asl+dwi+T1w union over sessions | 7 | ptbp-data-index Anatomy, PCASL, DWI, BOLD |
| Subjects | contrast_set=asl+T1w union over sessions | 3 | ptbp-data-index Anatomy, PCASL, DWI, BOLD |
| Subjects | contrast_set=asl+bold+T1w union over sessions | 1 | ptbp-data-index Anatomy, PCASL, DWI, BOLD |
| Subjects | contrast_set=asl+bold union over sessions | 1 | ptbp-data-index Anatomy, PCASL, DWI, BOLD |
| Studies | contrast=T1w | 181 | ptbp-data-index Anatomy |
| Studies | contrast=asl | 173 | ptbp-data-index PCASL |
| Studies | contrast=dwi | 166 | ptbp-data-index DWI |
| Studies | contrast=bold | 155 | ptbp-data-index BOLD |
Sources
The keys used in the table above.
- avants2015 Avants et al. 2015, The pediatric template of brain perfusion, Scientific Data paper
- figshare-ptbp-nifti PTBP_Nifti figshare record (subject images, 219 files, CC BY 4.0) website
- ptbp-data-index ptbp_data_index.csv (CC BY 4.0), one row per session; contrasts from its Anatomy, PCASL, DWI and BOLD columns computed
- ptbp-demographics ptbp_summary_demographics.csv (CC BY 4.0), counted per subject at the first scan date; columns SubID, ScanDate, AgeAtScan, Sex computed