PING
Pediatric Imaging, Neurocognition, and Genetics (PING)
Brain MRI, cognitive testing and genome-wide genotypes of typically developing children and young people, collected to link genetic variation to brain structure and cognition across development. 1,493 people aged 3 to 21 at 10 US sites, shared through the NIMH Data Archive.
Overview
PING is a cross-sectional study of typically developing children, adolescents and young adults that pairs multimodal brain MRI with cognitive testing, developmental history and genome-wide genotyping. It was run by the Center for Human Development at UC San Diego with nine partner sites and funded by NIDA and NICHD, with the aim of linking genetic variation to brain structure, connectivity and cognition across development. Data collection is finished and the resource is now held in the NIMH Data Archive.
Composition
More than 1,700 participants were enrolled, and the shared repository keeps the 1,493 who have usable data for at least two data types (780 male). Of these, 1,239 have acceptable MRI (645 male), 1,453 have cognitive scores and 1,391 have genotypes. Ages range from 3 to 21 years. The NDA collection record lists 1,494 shared subjects. Children with neurological disorders, head trauma, preterm birth, autism spectrum disorder, bipolar disorder, schizophrenia or intellectual disability were excluded; learning disability and ADHD were not exclusion criteria.
Acquisition
Scanning took place at 10 US sites on 3T GE, Siemens and Philips systems with harmonized protocols. A standard session held a 3D T1-weighted scan and a 3D T2-weighted fast spin echo scan, both with prospective motion correction, a high angular resolution diffusion scan and a resting-state BOLD fMRI scan, the last two with built-in distortion correction. Cognition was measured with the NIH Toolbox Cognition Battery, and saliva DNA was genotyped on the Illumina Human660W-Quad BeadChip.
Annotations
There are no manual lesion or structure labels. The repository includes processed measures from a FreeSurfer-based pipeline (cortical thickness, surface area, subcortical volumes) and diffusion tensor measures for atlas-defined fiber tracts, plus genetic ancestry estimates. Raw scans were rated for quality by trained technicians.
Known limitations
The study is cross-sectional. Some site review boards did not allow full sharing, so part of the raw imaging and genetic data is restricted. Imaging is pooled from several scanner models and vendors, so scanner effects need modelling.
Cohort
Aggregate numbers from the sources below. Bars are relative to the 1,493 subjects.
Sex
- Male 780 100%
Covers 780 of 1,493 subjects.
The PING Cohort in Jernigan et al. 2016, The PING Data Repository, NeuroImage (author manuscript PMC4628902)
Condition
Groups can overlap
- Healthy control 1,493 100%
The PING Cohort in Jernigan et al. 2016, The PING Data Repository, NeuroImage (author manuscript PMC4628902)
Country
- United States 1,493 100%
Introduction in Jernigan et al. 2016, The PING Data Repository, NeuroImage (author manuscript PMC4628902)
Age
range 3 to 21
No age bins reported.
Introduction in Jernigan et al. 2016, The PING Data Repository, NeuroImage (author manuscript PMC4628902)
Modality
- MRI 1,239 83%
The PING Cohort in Jernigan et al. 2016, The PING Data Repository, NeuroImage (author manuscript PMC4628902)
Field strength
- 3 T 1,239 83%
Image Acquisition and Preprocessing in Jernigan et al. 2016, The PING Data Repository, NeuroImage (author manuscript PMC4628902)
Modality by sex
Reported cross table. A dot marks a cell the source does not give.
| Male | |
|---|---|
| MRI | 645 |
The PING Cohort in Jernigan et al. 2016, The PING Data Repository, NeuroImage (author manuscript PMC4628902)
License and access
Our reading of the license, not legal advice. Before you use the data, read the original license and confirm that your use is allowed. We take no responsibility for how you use a dataset. Full disclaimer
A research proposal is reviewed and approved
NIMH Data Archive Data Use Terms and Conditions (Data Use Certification)
Terms every NIMH Data Archive data access request accepts. Data are for research, scholarship or teaching; they may only be shared with collaborators who hold their own access; re-identification is forbidden; each publication needs an NDA Study linked to the data and an acknowledgement; downloaded data must be deleted when the research ends or after the one-year access period.
The PING Data Resource is held in NIMH Data Archive collection 2607; the study page states that the data use policy and the Data Use Certification are managed by NDA. Access before the move to NDA ran under a separate PING Data Use Agreement, which is not broken down here.
What you can do
- Not stated
- Not stated
- Not stated
- Conditional
- Conditional
What you can share
- No
- Conditional
- Share trained models Not stated
What you must do
- Yes
- Share alike No
- Yes
- Conditional
- Manuscript review No
- No
- Yes
- Yes
Limits
- Yes
- Location limits No
Citation
Jernigan TL, Brown TT, Hagler DJ Jr, Akshoomoff N, Bartsch H, Newman E, et al. The Pediatric Imaging, Neurocognition, and Genetics (PING) Data Repository. NeuroImage 124(Pt B):1149-1154 (2016). doi:10.1016/j.neuroimage.2015.04.057
Sources
Every number on this page comes from one of these documents. Each chart names the table or page it is taken from. The raw numbers are in stats.csv.