PEARL-Neuro (ds004796)
A Polish Electroencephalography, Alzheimer's Risk-genes, Lifestyle and Neuroimaging (PEARL-Neuro) Database
Resting-state and task fMRI with EEG from healthy middle-aged adults genotyped for Alzheimer's disease risk genes (APOE, PICALM), collected to study how genetic risk relates to brain function, with health, blood and psychometric data.
Overview
PEARL-Neuro is an imaging genetics cohort from Poland built to look for early functional brain signatures of genetic risk for late-onset Alzheimer's disease. Healthy volunteers aged 50 to 63 were genotyped for APOE and PICALM, then carriers of risk alleles and a matched group with neutral alleles were invited back for EEG and functional MRI. The OpenNeuro release (ds004796, CC0) was made by Patrycja Dzianok and Ewa Kublik at the Nencki Institute of Experimental Biology and is described in a 2024 Scientific Data descriptor.
Composition
The first phase covered 192 people who agreed to open sharing (200 took part). For all of them participants.tsv holds APOE and PICALM genotypes, demographics, health and lifestyle questionnaires, family history of dementia and seven psychometric tests. The second phase included 79 participants (39 men, 40 women, mean age 55.3), who also have blood counts, a lipid profile and HSV serology. Of these, 69 have fMRI in the release; the descriptor lists the 10 without it, one of whom was withheld after an incidental finding on the structural scan. Almost all 79 have high-density EEG.
Acquisition
fMRI was acquired on a 3T Siemens Prisma FIT at the Bioimaging Research Center of the Institute of Physiology and Pathology of Hearing, with 2 mm isotropic voxels, TR 0.8 s and TE 38 ms. Each fMRI subject has six BOLD runs: resting state (eyes open and closed), a multi-source interference task and a Sternberg memory task, each in AP and PA phase encoding. EEG was recorded on a separate day at the Nencki Institute with a 128-channel Brain Products system using the same three protocols, with electrode positions and task log files under sourcedata.
Known limitations
- No anatomical MRI is shared, although a structural scan was acquired. Registration needs a template.
- Participants are healthy and middle-aged; no amyloid, tau or other Alzheimer's biomarkers were measured.
- The imaged subgroup was selected by genotype, so risk allele frequencies differ from the general population.
- Health and lifestyle variables are self-reported.
Cohort
Aggregate numbers from the sources below. Bars are relative to the 79 subjects.
Sex
- Female 40 51%
- Male 39 49%
Technical Validation, Participants profile in Dzianok & Kublik 2024, PEARL-Neuro Database: EEG, fMRI, health and lifestyle data of middle-aged people at risk of dementia, Scientific Data
Modality
- MRI 69 87%
file tree in OpenNeuro ds004796 snapshot 1.1.0 (dataset_description.json, README, BOLD sidecars, file tree, snapshot size)
Condition
Groups can overlap
- Healthy control 79 100%
Field strength
- 3 T 69 87%
Methods, Recording software and devices in Dzianok & Kublik 2024, PEARL-Neuro Database: EEG, fMRI, health and lifestyle data of middle-aged people at risk of dementia, Scientific Data
Sex by contrast / sequence
Reported cross table. A dot marks a cell the source does not give.
| BOLD fMRI | |
|---|---|
| Female | 34 |
| Male | 35 |
sex, sub-*/func in participants.tsv of ds004796 snapshot 1.1.0 (CC0), counted per row; subjects matched to sub-* folders and sub-*/func folders in the file tree
Age
mean 55.3 ± 3.1, median 56, range 50 to 63
age, second_phase in participants.tsv of ds004796 snapshot 1.1.0 (CC0), counted per row; subjects matched to sub-* folders and sub-*/func folders in the file tree; Table 6 in Dzianok & Kublik 2024, PEARL-Neuro Database: EEG, fMRI, health and lifestyle data of middle-aged people at risk of dementia, Scientific Data
Contrast / sequence
Groups can overlap
- BOLD fMRI 69 87%
file tree in OpenNeuro ds004796 snapshot 1.1.0 (dataset_description.json, README, BOLD sidecars, file tree, snapshot size)
Scanner vendor
- Siemens Healthineers 69 87%
Methods, Recording software and devices in Dzianok & Kublik 2024, PEARL-Neuro Database: EEG, fMRI, health and lifestyle data of middle-aged people at risk of dementia, Scientific Data
Country
- Poland 79 100%
Methods, General information in Dzianok & Kublik 2024, PEARL-Neuro Database: EEG, fMRI, health and lifestyle data of middle-aged people at risk of dementia, Scientific Data
Age by contrast / sequence
Reported cross table. A dot marks a cell the source does not give.
| BOLD fMRI | |
|---|---|
| 50-59 | 62 |
age, sub-*/func in participants.tsv of ds004796 snapshot 1.1.0 (CC0), counted per row; subjects matched to sub-* folders and sub-*/func folders in the file tree
Age by sex
Reported cross table. Missing cells were not published (fewer than 10 or not reported).
- 3850-5934
sex, age, second_phase in participants.tsv of ds004796 snapshot 1.1.0 (CC0), counted per row; subjects matched to sub-* folders and sub-*/func folders in the file tree
Contrast combinations
How many subjects have exactly each set of contrasts.
| bold | Subjects with exactly this set |
|---|---|
69 |
file tree in OpenNeuro ds004796 snapshot 1.1.0 (dataset_description.json, README, BOLD sidecars, file tree, snapshot size)
License and access
Our reading of the license, not legal advice. Before you use the data, read the original license and confirm that your use is allowed. We take no responsibility for how you use a dataset. Full disclaimer
Download without an account
Creative Commons Zero 1.0 Universal
Public domain dedication. Do anything with the data, including commercial use, without asking and without having to give credit.
dataset_description.json of snapshot 1.1.0 states "License" CC0.
What you can do
- Yes
- Yes
- Yes
- Yes
- Yes
What you can share
- Yes
- Yes
- Yes
What you must do
- No
- Share alike No
- No
- No
- Manuscript review No
- Release code No
- Return results No
- Delete after use No
Limits
- No
- Location limits No
Citation
Dzianok P, Kublik E. PEARL-Neuro Database: EEG, fMRI, health and lifestyle data of middle-aged people at risk of dementia. Scientific Data 11, 276 (2024). doi:10.1038/s41597-024-03106-5
Sources
Every number on this page comes from one of these documents. Each chart names the table or page it is taken from. The raw numbers are in stats.csv.
- Dzianok & Kublik 2024, PEARL-Neuro Database: EEG, fMRI, health and lifestyle data of middle-aged people at risk of dementia, Scientific Data paper
- OpenNeuro ds004796 snapshot 1.1.0 (dataset_description.json, README, BOLD sidecars, file tree, snapshot size) website
- participants.tsv of ds004796 snapshot 1.1.0 (CC0), counted per row; subjects matched to sub-* folders and sub-*/func folders in the file tree computed