ParkTDI
High-quality diffusion-weighted imaging of Parkinson's disease
Motion-corrected 120-direction, two-shell diffusion MRI of 27 people with Parkinson's disease and 26 matched controls from Liège, with normalized track density maps and clinical and neuropsychological scores.
Overview
ParkTDI is a small cross-sectional diffusion MRI study of Parkinson's disease from the Cyclotron Research Centre at the University of Liège, released on NITRC in 2014 together with the paper that introduced track density imaging for this disease. It is used to compare white matter microstructure and tractography-derived maps between patients and controls, and as a high angular resolution test set for diffusion modelling.
Composition
The release covers 53 people: 27 non-demented patients with clinically diagnosed Parkinson's disease and 26 healthy controls matched on age, sex and education. The patients were in early stages (mean Hoehn and Yahr stage 1.5, mean disease duration 5 years). Three downloads are offered: the motion-corrected diffusion images, spatially normalized track density maps for all 53 subjects, and a CSV file with demographics, intracranial volume, a motion index, neuropsychological test scores and, for patients, UPDRS parts 2 and 3, Hoehn and Yahr stage, disease duration and levodopa equivalent dose.
Acquisition
All scans come from one 3 T head-only Siemens Magnetom Allegra with an 8-channel head coil. The diffusion sequence used a twice-refocused spin echo with EPI readout, 120 gradient directions at b = 1000 and b = 2500 s/mm², 22 interleaved b = 0 volumes, 2.4 mm isotropic voxels and about 35 minutes of scan time. Patients were scanned on their usual medication. The authors realigned the volumes using the interleaved b = 0 images, split them by shell and averaged the b = 0 images to the front of each 4D NIfTI file, with FSL-style gradient tables alongside. The paper also describes multi-parameter mapping scans, but these are not part of the download.
Known limitations
The cohort is small and comes from a single scanner and site. Subjects with poor image quality were excluded from a larger sample before release. Only preprocessed diffusion data are shared, not the raw scanner output, and no structural T1-weighted images are included. The NITRC page names the license as Attribution Share Alike without a version number.
Cohort
Aggregate numbers from the sources below. Bars are relative to the 53 subjects.
Sex
- Female 25 47%
- Male 28 53%
Age
mean 65.01± 7.6 · range 47 to 81Contrast / sequence
subjects, values can overlap
- Diffusion-weighted 53 100%
Condition
subjects, values can overlap
- Parkinson's disease 27 51%
- Healthy control 26 49%
Scanner vendor
subjects
- Siemens Healthineers 53 100%
Field strength
subjects
- 3 T 53 100%
License and access
Our reading of the license, not legal advice. Before you use the data, read the original license and confirm that your use is allowed. We take no responsibility for how you use a dataset. Full disclaimer
Download without an account
Creative Commons Attribution-ShareAlike 4.0 International
Use, share and adapt for any purpose with credit. Anything you share that is built on the data must use the same license.
The NITRC project page names the license only as "Attribution Share Alike" and gives no version. The rule answers of CC BY-SA 3.0 and 4.0 are the same in this index.
What you can do
- Yes
- Yes
- Yes
- Yes
What you can share
- Yes
- Conditional
- Conditional
What you must do
- Yes
- Yes
- No
- No
- Manuscript review No
- Release code No
- Return results No
- Delete after use No
Limits
- No
- Location limits No
Citation
Ziegler E, Rouillard M, André E, Coolen T, Stender J, Balteau E, Phillips C, Garraux G. Mapping track density changes in nigrostriatal and extranigral pathways in Parkinson's disease. NeuroImage 99:498-508 (2014).
@article{ziegler2014,
title={Mapping track density changes in nigrostriatal and extranigral pathways in Parkinson's disease},
author={Ziegler, Erik and Rouillard, Maud and Andr{\'e}, Elodie and Coolen, Tim and Stender, Johan and Balteau, Evelyne and Phillips, Christophe and Garraux, Ga{\"e}tan},
journal={NeuroImage},
volume={99},
pages={498--508},
year={2014},
doi={10.1016/j.neuroimage.2014.06.033}
} All numbers
Every number on this page, as stored in stats.csv, with its source.
| Measure | Breakdown | Value | Source |
|---|---|---|---|
| Subjects | total | 53 | nitrc-parktdi |
| Subjects | condition=parkinsons | 27 | ziegler2014 Table 1 |
| Subjects | condition=healthy | 26 | ziegler2014 Table 1 |
| Subjects | contrast=dwi | 53 | nitrc-parktdi |
| Subjects | sex=female | 25 | pdclinicaldata Sex |
| Subjects | sex=male | 28 | pdclinicaldata Sex |
| Subjects | condition=parkinsons;sex=male | 14 | ziegler2014 Table 1 |
| Subjects | condition=parkinsons;sex=female | 13 | ziegler2014 Table 1 |
| Subjects | condition=healthy;sex=male | 14 | ziegler2014 Table 1 |
| Subjects | condition=healthy;sex=female | 12 | ziegler2014 Table 1 |
| Subjects | age=40-49 | 2 | pdclinicaldata Age |
| Subjects | age=50-59 | 12 | pdclinicaldata Age |
| Subjects | age=60-69 | 25 | pdclinicaldata Age |
| Subjects | age=70-79 | 13 | pdclinicaldata Age |
| Subjects | age=80-89 | 1 | pdclinicaldata Age |
| Subjects | field_strength=3 | 53 | ziegler2014 Imaging data acquisition |
| Subjects | vendor=siemens Magnetom Allegra head-only scanner | 53 | ziegler2014 Imaging data acquisition |
| Mean age | total | 65 | pdclinicaldata Age |
| Age SD | total | 7.6 | pdclinicaldata Age |
| Median age | total | 65.7 | pdclinicaldata Age |
| Minimum age | total | 47 | pdclinicaldata Age |
| Maximum age | total | 81 | pdclinicaldata Age |
| Mean age | condition=healthy | 64 | ziegler2014 Table 1 |
| Age SD | condition=healthy | 8 | ziegler2014 Table 1 |
| Mean age | condition=parkinsons | 66 | ziegler2014 Table 1 |
| Age SD | condition=parkinsons | 8 | ziegler2014 Table 1 |
Sources
The keys used in the table above.
- ziegler2014 Ziegler et al. 2014, NeuroImage paper
- nitrc-parktdi NITRC project page for parktdi website
- nitrc-parktdi-downloads NITRC file releases for parktdi website
- pdclinicaldata PDClinicalData.csv demographics file (CC BY-SA), one row per subject computed