PAFIN (ds006131)
PAFIN: PennLINC AFfective INstability
Multimodal brain MRI of adolescents and young adults, collected to study how mood instability, emotion regulation and sleep relate to brain development, with multi-echo movie fMRI, diffusion, perfusion, actigraphy and self-report questionnaires. Ongoing study in Philadelphia.
Overview
PAFIN (PennLINC AFfective INstability) is an ongoing study at the University of Pennsylvania that pairs brain MRI with dense measures of mood and sleep in adolescents and young adults. It aims to enrol 100 people aged 13 to 23 and asks how affective instability, emotion regulation and sleep relate to brain development. Besides imaging, participants fill in self-report scales, do a cognitive battery, answer ecological momentary assessment prompts on their phone for two weeks and wear an actigraphy watch for three weeks. Raw data are on OpenNeuro as ds006131 under CC0, without a data use agreement. The protocol paper appeared in Aperture Neuro in 2026 and described a first release of 10 participants.
Composition
Snapshot 2.0.1 holds 51 subjects (49 study participants and 2 pilots), each with one session. The participants file gives 36 women, 14 men and one pilot coded as other, aged 15 to 31 at the scan. Every subject has a T1-weighted scan and multi-echo fMRI; most also have T2-weighted, multi-echo gradient echo, diffusion and perfusion scans (see the stats). Self-report questionnaires sit in phenotype/, raw actigraphy in sourcedata/ and GGIR actigraphy outputs in derivatives/.
Acquisition
All scans come from one 3 T Siemens Magnetom Prisma with a 64-channel coil in a one-hour session. Structural scans are 1 mm isotropic T1w and T2w plus a 5-echo gradient echo with magnitude and phase for susceptibility mapping. Two 5-echo, multiband fMRI runs at 2 mm were acquired while participants watched the Pixar shorts "Bao" and "Your Friend the Rat", with physiological recordings. Diffusion is a 92-direction compressed sensing diffusion spectrum scan; perfusion is a single-delay PCASL with an M0 reference. Field maps exist for the functional and diffusion scans.
Annotations
No manual image labels. Processed data are released as separate CC0 OpenNeuro datasets: fMRIPrep (ds006185, made with fMRIPrep 25.2.4), MRIQC, QSIPrep, QSIRecon, ASLPrep, fMRIPost-AROMA, tedana and XCP-D outputs.
Known limitations
Recruitment continues, so counts change between snapshots. The README says every participant has a T2w scan, but the file tree has T2w for 41 of 51 subjects. Ages in the participants file are from the first session. Physiological recordings have not been quality checked. Processed susceptibility maps are not provided.
Cohort
Aggregate numbers from the sources below. Bars are relative to the 51 subjects.
Sex
- Female 36 71%
- Male 14 27%
- Other 1 2%
sex in participants.tsv of ds006131 (CC0), columns age and sex
Contrast / sequence
Groups can overlap
- T1-weighted 51 100%
- BOLD fMRI 51 100%
- Diffusion-weighted 50 98%
- Arterial spin labeling 49 96%
- T2*-weighted 46 90%
- T2-weighted 41 80%
anat, func, dwi, perf in BIDS file tree of ds006131 snapshot 2.0.1 (CC0), NIfTI files under sub-*/ counted per suffix
Country
- United States 51 100%
Methods: Participants in Brook et al. 2026, An open, fully-processed data resource for studying mood and sleep variability in the developing brain, Aperture Neuro
Age
mean 20.7, median 21, range 15 to 31
age in participants.tsv of ds006131 (CC0), columns age and sex
Scanner vendor
- Siemens Healthineers 51 100%
Methods: Imaging Acquisition in Brook et al. 2026, An open, fully-processed data resource for studying mood and sleep variability in the developing brain, Aperture Neuro
Field strength
- 3 T 51 100%
Methods: Imaging Acquisition in Brook et al. 2026, An open, fully-processed data resource for studying mood and sleep variability in the developing brain, Aperture Neuro
Contrast combinations
How many subjects have exactly each set of contrasts.
| T1w | T2w | T2starw | dwi | bold | asl | Subjects with exactly this set |
|---|---|---|---|---|---|---|
40 | ||||||
6 | ||||||
2 | ||||||
1 | ||||||
1 | ||||||
1 |
From BIDS file tree of ds006131 snapshot 2.0.1 (CC0), NIfTI files under sub-*/ counted per suffix
License and access
Our reading of the license, not legal advice. Before you use the data, read the original license and confirm that your use is allowed. We take no responsibility for how you use a dataset. Full disclaimer
Download without an account
Creative Commons Zero 1.0 Universal
Public domain dedication. Do anything with the data, including commercial use, without asking and without having to give credit.
dataset_description.json of snapshot 2.0.1 states "License" CC0. The fMRIPrep derivatives (ds006185) are also CC0.
What you can do
- Yes
- Yes
- Yes
- Yes
- Yes
What you can share
- Yes
- Yes
- Yes
What you must do
- No
- Share alike No
- No
- No
- Manuscript review No
- Release code No
- Return results No
- Delete after use No
Limits
- No
- Location limits No
Citation
Brook JBH, Salo T, Luo AC, et al. An open, fully-processed data resource for studying mood and sleep variability in the developing brain. Aperture Neuro 6 (2026). doi:10.52294/001c.151820
Sources
Every number on this page comes from one of these documents. Each chart names the table or page it is taken from. The raw numbers are in stats.csv.
- Brook et al. 2026, An open, fully-processed data resource for studying mood and sleep variability in the developing brain, Aperture Neuro paper
- OpenNeuro ds006131 snapshot 2.0.1 (README, dataset_description.json, CHANGES and snapshot size) website
- participants.tsv of ds006131 (CC0), columns age and sex computed
- BIDS file tree of ds006131 snapshot 2.0.1 (CC0), NIfTI files under sub-*/ counted per suffix computed