NIMH CTNB and BEB Structural MRI (ds005112)
Structural MRI dataset from NIMH: Clinical and Translational Neuroscience Branch and Behavioral Endocrinology Branch
Structural brain MRI of children, adolescents and adults aged 8 to 55, pooled from two NIMH intramural protocols on neuropsychiatric imaging and on brain development across puberty, with T1-weighted scans in every session and fat-suppressed T2-weighted scans in some.
Overview
This OpenNeuro dataset (ds005112) gathers structural brain MRI collected under two protocols of the NIMH Intramural Research Program: 00-M-0085, a 3 T imaging study of people with neuropsychiatric disorders and healthy volunteers run by Karen Berman's Clinical and Translational Neuroscience Branch (ClinicalTrials.gov NCT00004571), and 11-M-0251, a longitudinal study of the hormonal and brain changes that come with puberty run by Peter Schmidt's Behavioral Endocrinology Branch (NCT01434368). Scans were taken between October 2018 and September 2023 in Bethesda, Maryland. The first snapshot appeared in April 2024 and is released under CC0.
Composition
There are 135 participants with 244 sessions; 62 people were scanned once and the rest two to six times. Participants are 75 male and 60 female, with one age per person ranging from 8 to 55 years (median 16). The participants file does not record which protocol each person came from, nor any diagnosis or group. Handedness is given for most participants.
Acquisition
All scans come from a GE Discovery MR750 3 T scanner with a 32-channel head coil. The main T1-weighted image is a sagittal multi-echo MP-RAGE at 1 mm; a handful of sessions use an axial or sagittal MP-RAGE or a MEMPRAGE variant instead. A 2D fat-suppressed fast spin-echo T2-weighted scan with 1.7 mm slices is present in 94 sessions from 91 participants. The 1,006 NIfTI files total about 7.3 GB, converted with dcm2niix, with a JSON sidecar of acquisition parameters for each.
Annotations
The release has no labels, masks or derived outputs; only raw anatomical images and demographic variables are shared.
Known limitations
- With no protocol or diagnosis column, it is unknown which participants, if any, have a neuropsychiatric diagnosis.
- Many sessions hold several T1-weighted runs, in part because the scanner's original and filtered reconstructions are both included, so the scan count overstates the number of distinct acquisitions.
- Age is a single value per participant even for people with several sessions.
- 44 participants have no T2-weighted scan, and almost all of the other 91 have it in only one of their sessions.
Cohort
Aggregate numbers from the sources below. Bars are relative to the 135 subjects.
Sex
- Female 60 44%
- Male 75 56%
sex in participants.tsv of ds005112 snapshot 1.0.1 (CC0), counted per row
Contrast / sequence
Groups can overlap
- T1-weighted 135 100%
- T2-weighted 91 67%
anat/*_T1w.nii.gz, anat/*_T2w.nii.gz in File tree of ds005112 snapshot 1.0.1 (CC0), NIfTI files counted per subject, session and BIDS suffix
Field strength
- 3 T 135 100%
README: Apparatus and anat sidecars in OpenNeuro ds005112 snapshot 1.0.1 (dataset_description.json, README, CHANGES, sidecars and snapshot summary)
Age
mean 21.2 ± 11.2, median 16, range 8 to 55
age in participants.tsv of ds005112 snapshot 1.0.1 (CC0), counted per row; README: Dataset summary in OpenNeuro ds005112 snapshot 1.0.1 (dataset_description.json, README, CHANGES, sidecars and snapshot summary)
Scanner vendor
- GE HealthCare 135 100%
README: Apparatus and anat sidecars in OpenNeuro ds005112 snapshot 1.0.1 (dataset_description.json, README, CHANGES, sidecars and snapshot summary)
Country
- United States 135 100%
Age by sex
Reported cross table. Missing cells were not published (fewer than 10 or not reported).
- n/a30-3914
- 1620-2916
- 3010-1934
sex and age in participants.tsv of ds005112 snapshot 1.0.1 (CC0), counted per row
Contrast combinations
How many subjects have exactly each set of contrasts.
| T1w | T2w | Subjects with exactly this set |
|---|---|---|
91 | ||
44 |
sub-*/ in File tree of ds005112 snapshot 1.0.1 (CC0), NIfTI files counted per subject, session and BIDS suffix
License and access
Our reading of the license, not legal advice. Before you use the data, read the original license and confirm that your use is allowed. We take no responsibility for how you use a dataset. Full disclaimer
Download without an account
Creative Commons Zero 1.0 Universal
Public domain dedication. Do anything with the data, including commercial use, without asking and without having to give credit.
dataset_description.json of snapshot 1.0.1 states "License" CC0.
What you can do
- Yes
- Yes
- Yes
- Yes
- Yes
What you can share
- Yes
- Yes
- Yes
What you must do
- No
- Share alike No
- No
- No
- Manuscript review No
- Release code No
- Return results No
- Delete after use No
Limits
- No
- Location limits No
Citation
Berman K, Schmidt P. Structural MRI dataset from NIMH: Clinical and Translational Neuroscience Branch and Behavioral Endocrinology Branch. OpenNeuro dataset ds005112, version 1.0.1 (2024). doi:10.18112/openneuro.ds005112.v1.0.1
Sources
Every number on this page comes from one of these documents. Each chart names the table or page it is taken from. The raw numbers are in stats.csv.
- OpenNeuro ds005112 snapshot 1.0.1 (dataset_description.json, README, CHANGES, sidecars and snapshot summary) website
- participants.tsv of ds005112 snapshot 1.0.1 (CC0), counted per row computed
- File tree of ds005112 snapshot 1.0.1 (CC0), NIfTI files counted per subject, session and BIDS suffix computed
- ClinicalTrials.gov NCT01434368, NIH protocol 11-M-0251 (longitudinal study of puberty) website
- ClinicalTrials.gov NCT00004571, NIH protocol 00-M-0085 (3 T MRI of neuropsychiatric patients and volunteers) website