Hippocampal pattern separation in aging MRI (ds004665)
Structural and functional correlates of behavioral pattern separation in the hippocampus and medial temporal lobe
Structural, diffusion and resting-state brain MRI of healthy younger and older adults, collected to relate hippocampal subfield volumes, white matter and connectivity to how well people tell similar memories apart. 54 participants from Utah at 3T, in BIDS under CC0.
Overview
This dataset comes from a Brigham Young University study of pattern separation, the ability to keep memories of similar events apart, in younger and older adults. The authors measured volumes of medial temporal lobe regions and hippocampal subfields, white matter integrity from diffusion tensor imaging and resting functional connectivity, and related them to performance on a task that asks whether an object is old, new or merely similar to one seen before. They report that age and the volume of the left CA3/dentate gyrus predicted performance, while diffusion and connectivity measures did not. The images are on OpenNeuro as ds004665 under CC0.
Composition
participants.tsv lists 54 adults, 53 of them right-handed: 20 in the young group aged 18 to 26 and 34 in the old group aged 56 to 83. There are 32 women and 22 men. The scanner_site column assigns 36 participants to Brigham Young University (20 young, 16 old) and 18 old participants to the University of Utah. Each participant has one session.
Acquisition
Every sidecar names a Siemens TrioTim 3T scanner with a head matrix coil. Every participant has an MPRAGE T1-weighted volume (1.2 mm slices), a T2-weighted turbo spin echo volume with high in-plane resolution and 3 mm slices, a diffusion run of 52 volumes (48 at b = 1000 s/mm² and 4 at b = 0) and one resting-state EPI run with a repetition time of 2 s.
Annotations
There are no image labels. participants.tsv holds, per participant, the counts of old, similar and new responses to targets, lures, foils and first presentations in the memory task. One participant has no task scores.
Known limitations
- The README gives only the paper abstract; there is no description of the protocol, exclusions or task in the release, and the full paper is not openly available.
- The sex column mixes two codings (Female/Male and F/M) between sites.
- Sidecars from the University of Utah subjects lack institution fields and use an older scanner software version.
- No participant is aged 30 to 49, so age effects rest on two separated groups.
- No hippocampal subfield segmentations or other derivatives are included.
Cohort
Aggregate numbers from the sources below. Bars are relative to the 54 subjects.
Sex
- Female 32 59%
- Male 22 41%
sex in participants.tsv of ds004665 (CC0), counted per row from the age, sex and scanner_site columns
Contrast / sequence
Groups can overlap
- T1-weighted 54 100%
- T2-weighted 54 100%
- Diffusion-weighted 54 100%
- BOLD fMRI 54 100%
anat/*_T1w.nii.gz, anat/*_T2w.nii.gz, dwi/*_acq-dti_dwi.nii.gz, func/*_task-resting_bold.nii.gz in File listing and BIDS sidecars of the ds004665 repository (CC0), counted per T1w, T2w, dwi and bold NIfTI file
Scanner vendor
- Siemens Healthineers 54 100%
*_T1w.json Manufacturer in File listing and BIDS sidecars of the ds004665 repository (CC0), counted per T1w, T2w, dwi and bold NIfTI file
Country
- United States 54 100%
scanner_site in participants.tsv of ds004665 (CC0), counted per row from the age, sex and scanner_site columns
Age
median 66.5, range 18 to 83
age in participants.tsv of ds004665 (CC0), counted per row from the age, sex and scanner_site columns
Condition
Groups can overlap
- Healthy control 54 100%
Field strength
- 3 T 54 100%
*_T1w.json MagneticFieldStrength in File listing and BIDS sidecars of the ds004665 repository (CC0), counted per T1w, T2w, dwi and bold NIfTI file
Contrast combinations
How many subjects have exactly each set of contrasts.
| T1w | T2w | dwi | bold | Subjects with exactly this set |
|---|---|---|---|---|
54 |
License and access
Our reading of the license, not legal advice. Before you use the data, read the original license and confirm that your use is allowed. We take no responsibility for how you use a dataset. Full disclaimer
Download without an account
Creative Commons Zero 1.0 Universal
Public domain dedication. Do anything with the data, including commercial use, without asking and without having to give credit.
dataset_description.json of snapshot 1.0.0 states "License" CC0.
What you can do
- Yes
- Yes
- Yes
- Yes
- Yes
What you can share
- Yes
- Yes
- Yes
What you must do
- No
- Share alike No
- No
- No
- Manuscript review No
- Release code No
- Return results No
- Delete after use No
Limits
- No
- Location limits No
Citation
Doxey CR, Kirwan CB. Structural and functional correlates of behavioral pattern separation in the hippocampus and medial temporal lobe. Hippocampus 25(4):524-533 (2015). doi:10.1002/hipo.22389
Sources
Every number on this page comes from one of these documents. Each chart names the table or page it is taken from. The raw numbers are in stats.csv.
- Doxey and Kirwan 2015, Structural and functional correlates of behavioral pattern separation in the hippocampus and medial temporal lobe, Hippocampus (abstract and author affiliation) paper
- OpenNeuro ds004665 snapshot 1.0.0 (dataset_description.json, README, CHANGES, BIDS sidecars and snapshot size) website
- participants.tsv of ds004665 (CC0), counted per row from the age, sex and scanner_site columns computed
- File listing and BIDS sidecars of the ds004665 repository (CC0), counted per T1w, T2w, dwi and bold NIfTI file computed