Arousal and Salience Across Age fMRI (ds001242)
Examining effects of arousal on responses to salient and non-salient stimuli in younger and older adults
Task fMRI of younger and older adults detecting salient images after a tone conditioned to predict shock, collected to test how arousal and the locus coeruleus shape attention with age. 52 healthy participants with T1-weighted, neuromelanin-sensitive and diffusion MRI.
Overview
This OpenNeuro release holds the brain MRI behind a study by Mara Mather's group at the University of Southern California on how arousal changes attention in younger and older adults. Participants first learned that one of two tones predicted a mild shock. In the main task the tones were played before pairs of place and object pictures, and people reported where the higher-contrast picture appeared. The study tested whether arousal, through the locus coeruleus noradrenaline system, boosts brain responses to salient input more in younger than in older adults. The data went public on OpenNeuro in 2018 as ds001242 under the Open Data Commons Public Domain Dedication and License; the current snapshot is 1.0.0 from June 2019.
Composition
The participants table lists 52 healthy adults with an age group and sex for each: 28 younger adults (9 women) and 24 older adults (9 women). The paper gives the age ranges as 18 to 34 and 55 to 75; individual ages are not shared. Every subject has anatomical, diffusion and functional images, 540 NIfTI files in total.
Acquisition
All scans come from a Siemens 3 T Magnetom Trio with a 32-channel head coil. The anatomical folder holds a 1 mm MPRAGE
T1-weighted image and a T1-weighted fast spin echo scan of 11 axial 2.5 mm slices, used to measure neuromelanin
signal in the locus coeruleus. The neuromelanin files are stored as hidden files with a .bidsignore
prefix because BIDS had no suffix for them. The diffusion scan has one b=0 volume and 64 volumes at b=1000. The
functional runs are gradient-echo EPI with TR 2 s and 4 mm slices: one fear-conditioning run, one place localizer run
and up to five spatial detection runs. Eye-tracking (pupil) and ECG, respiration and skin conductance recordings
accompany the task runs.
Annotations
There are no image annotations. BIDS events files give the timing of tones, pictures and responses.
Known limitations
- Ages are only given as two groups, not per person.
- Some subjects have fewer than five spatial detection runs.
- Two subjects (01 and 44) have two MPRAGE images because they left the scanner between runs.
- The first three volumes of each functional run were removed before release.
- The physiological sidecars warn of scanner noise in some ECG and pupil recordings; the authors excluded several subjects from those analyses.
- One site, small groups.
Cohort
Aggregate numbers from the sources below. Bars are relative to the 52 subjects.
Sex
- Female 18 35%
- Male 34 65%
sex in participants.tsv of ds001242 snapshot 1.0.0 (PDDL), counted per row
Contrast / sequence
Groups can overlap
- T1-weighted 52 100%
- BOLD fMRI 52 100%
- Diffusion-weighted 52 100%
sub-*/anat/*T1w.nii.gz, sub-*/func/*_bold.nii.gz, sub-*/dwi/*_dwi.nii.gz in File tree of ds001242 snapshot 1.0.0 (PDDL), NIfTI files counted per subject and BIDS suffix
Field strength
- 3 T 52 100%
Methods: MRI data acquisition in Lee et al. 2018, Arousal increases neural gain via the locus coeruleus-norepinephrine system in younger adults but not in older adults, Nature Human Behaviour (PMC author manuscript)
Age
range 18 to 75
Methods: Participants in Lee et al. 2018, Arousal increases neural gain via the locus coeruleus-norepinephrine system in younger adults but not in older adults, Nature Human Behaviour (PMC author manuscript)
Scanner vendor
- Siemens Healthineers 52 100%
Methods: MRI data acquisition in Lee et al. 2018, Arousal increases neural gain via the locus coeruleus-norepinephrine system in younger adults but not in older adults, Nature Human Behaviour (PMC author manuscript)
Country
- United States 52 100%
Methods: Participants in Lee et al. 2018, Arousal increases neural gain via the locus coeruleus-norepinephrine system in younger adults but not in older adults, Nature Human Behaviour (PMC author manuscript)
Age by sex
Reported cross table. Missing cells were not published (fewer than 10 or not reported).
- 955-7515
- 918-3419
Methods: Participants in Lee et al. 2018, Arousal increases neural gain via the locus coeruleus-norepinephrine system in younger adults but not in older adults, Nature Human Behaviour (PMC author manuscript); group and sex in participants.tsv of ds001242 snapshot 1.0.0 (PDDL), counted per row
Contrast combinations
How many subjects have exactly each set of contrasts.
| T1w | dwi | bold | Subjects with exactly this set |
|---|---|---|---|
52 |
anat, dwi and func folders in File tree of ds001242 snapshot 1.0.0 (PDDL), NIfTI files counted per subject and BIDS suffix
License and access
Our reading of the license, not legal advice. Before you use the data, read the original license and confirm that your use is allowed. We take no responsibility for how you use a dataset. Full disclaimer
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Open Data Commons Public Domain Dedication and License v1.0
Public domain dedication for databases and their contents. Use, change and share the data for any purpose, including commercial use, without having to give credit.
dataset_description.json of snapshot 1.0.0 states "This dataset is made available under the Public Domain Dedication and License v1.0". It adds a non-binding request to cite the associated papers and acknowledge the funders.
What you can do
- Yes
- Yes
- Yes
- Yes
- Yes
What you can share
- Yes
- Yes
- Yes
What you must do
- No
- Share alike No
- No
- No
- Manuscript review No
- Release code No
- Return results No
- Delete after use No
Limits
- No
- Location limits No
Citation
Lee TH, Greening SG, Ueno T, Clewett D, Ponzio A, Sakaki M, Mather M. Arousal increases neural gain via the locus coeruleus-norepinephrine system in younger adults but not in older adults. Nature Human Behaviour 2:356-366 (2018). doi:10.1038/s41562-018-0344-1
Sources
Every number on this page comes from one of these documents. Each chart names the table or page it is taken from. The raw numbers are in stats.csv.
- Lee et al. 2018, Arousal increases neural gain via the locus coeruleus-norepinephrine system in younger adults but not in older adults, Nature Human Behaviour (PMC author manuscript) paper
- OpenNeuro ds001242 snapshot 1.0.0 (README, dataset_description.json, sidecars and snapshot summary) website
- participants.tsv of ds001242 snapshot 1.0.0 (PDDL), counted per row computed
- File tree of ds001242 snapshot 1.0.0 (PDDL), NIfTI files counted per subject and BIDS suffix computed