Multi-echo Cambridge (ds000258)
Multi-echo Cambridge
Resting-state multi-echo fMRI and T1w brain MRI of neurotypical adults scanned in Cambridge, used to separate BOLD signal from motion and other non-BOLD influences. Each of 89 subjects has one four-echo rest run and one MPRAGE.
Overview
Multi-echo Cambridge is an OpenNeuro release (ds000258) of resting-state fMRI collected with a four-echo EPI sequence at the University of Cambridge. It first appeared on OpenfMRI in January 2018 and moved to OpenNeuro later that year. Power and colleagues used it as their "ME cohort" in a 2018 PNAS study on separating BOLD signal from motion and respiration effects with ME-ICA denoising; the paper describes the scans as previously published by Kundu et al. Snapshot 1.0.1 from August 2023 added a curator to the authors and cleaned up documentation.
Composition
There are 89 subjects, each with one T1-weighted MPRAGE and one resting-state run saved as four NIfTI files, one per echo. The README describes them as neurotypical, English-speaking, right-handed adults with no history of neurological or psychiatric illness. No participants file is included, so age and sex are not available. The release has no sessions and no derivatives in its file tree.
Acquisition
Scanning used a Siemens Trio at 3 T with a 32-channel receive-only head coil. The rest run lasted 9.84 minutes (139 volumes, TR 2.47 s, flip angle 78 degrees) with eyes open on a white screen. Echo times were 12, 28, 44 and 60 ms, with 64 x 64 matrix, 3.75 mm in-plane voxels, 32 oblique interleaved slices of 4.4 mm with a 10% gap and an acceleration factor of 3. The MPRAGE had 1 mm in-plane resolution and an inversion time of 1,100 ms. Anatomical images were defaced with pydeface by the OpenfMRI curators.
Annotations
None. The data are raw images without labels.
Known limitations
The release has no demographic file and no data descriptor of its own. Only a single rest run is available per subject. The README says MRIQC outputs sit under derivatives/mriqc, but the published file tree does not contain them.
Cohort
Aggregate numbers from the sources below. Bars are relative to the 89 subjects.
Contrast / sequence
Groups can overlap
- T1-weighted 89 100%
- BOLD fMRI 89 100%
anat, func in BIDS file tree of ds000258 snapshot 1.0.1 (CC0), NIfTI files under sub-*/ counted per suffix
Field strength
- 3 T 89 100%
README (Data Acquisition) in OpenNeuro ds000258 snapshot 1.0.1 (README, dataset_description.json, CHANGES and snapshot size)
Condition
Groups can overlap
- Healthy control 89 100%
README (Subjects) in OpenNeuro ds000258 snapshot 1.0.1 (README, dataset_description.json, CHANGES and snapshot size)
Scanner vendor
- Siemens Healthineers 89 100%
README (Data Acquisition) in OpenNeuro ds000258 snapshot 1.0.1 (README, dataset_description.json, CHANGES and snapshot size)
Country
- United Kingdom 89 100%
README (Subjects) in OpenNeuro ds000258 snapshot 1.0.1 (README, dataset_description.json, CHANGES and snapshot size)
Contrast combinations
How many subjects have exactly each set of contrasts.
| T1w | bold | Subjects with exactly this set |
|---|---|---|
89 |
From BIDS file tree of ds000258 snapshot 1.0.1 (CC0), NIfTI files under sub-*/ counted per suffix
License and access
Our reading of the license, not legal advice. Before you use the data, read the original license and confirm that your use is allowed. We take no responsibility for how you use a dataset. Full disclaimer
Download without an account
Creative Commons Zero 1.0 Universal
Public domain dedication. Do anything with the data, including commercial use, without asking and without having to give credit.
dataset_description.json of snapshot 1.0.1 states "License" CC0.
What you can do
- Yes
- Yes
- Yes
- Yes
- Yes
What you can share
- Yes
- Yes
- Yes
What you must do
- No
- Share alike No
- No
- No
- Manuscript review No
- Release code No
- Return results No
- Delete after use No
Limits
- No
- Location limits No
Citation
Power JD, Plitt M, Gotts SJ, Kundu P, Voon V, Bandettini PA, Martin A. Ridding fMRI data of motion-related influences: Removal of signals with distinct spatial and physical bases in multiecho data. PNAS 115(9):E2105-E2114 (2018). doi:10.1073/pnas.1720985115
Sources
Every number on this page comes from one of these documents. Each chart names the table or page it is taken from. The raw numbers are in stats.csv.
- OpenNeuro ds000258 snapshot 1.0.1 (README, dataset_description.json, CHANGES and snapshot size) website
- BIDS file tree of ds000258 snapshot 1.0.1 (CC0), NIfTI files under sub-*/ counted per suffix computed
- Power et al. 2018, Ridding fMRI data of motion-related influences: Removal of signals with distinct spatial and physical bases in multiecho data, PNAS paper