Duke Liver Dataset (DLDS)
Duke Liver Dataset (MRI)
Abdominal MRI series of patients with suspected liver cirrhosis, labelled by series type with liver masks for some, for training series classifiers and liver segmentation models. 2,146 series of 105 patients from Duke, 310 with manual whole-liver masks.
Overview
The Duke Liver Dataset (DLDS) is a collection of routine clinical liver MRI examinations from Duke University, released on Zenodo and described in a 2023 data resource article in Radiology: Artificial Intelligence. It was built to train and test two kinds of models: classifiers that recognize the type of an abdominal MRI series from its pixels alone, and liver segmentation models.
Composition
The dataset holds 2146 de-identified image series (113 280 DICOM images) from 105 adult patients, 76 men and 29 women aged 30 to 80. Every series carries one of 17 series-type labels, coded as letters A to Q so that users can blind themselves; a key file maps the letters to the types. The types cover diffusion and ADC, axial and coronal T2w, MRCP, localizers, in-phase and opposed-phase imaging, precontrast fat-suppressed T1w, several arterial, transitional, late dynamic and portal venous phases, and a catch-all "anything else" class. A segmentation subset contains 310 series from 95 patients with liver masks. Version 2.0.0 restored labels and masks for 26 patients that version 1.0.0 had withheld; the record lists their ids for users who want them as a test set.
Acquisition
Patients had contrast-enhanced abdominal MRI for a clinical indication of cirrhosis at one of three centers, and 87 showed imaging signs of cirrhosis. Contrast agents were gadobenate dimeglumine or gadoxetate disodium. Scanners were Siemens (96) and GE (9), at 1.5 T (54) or 3 T (51). The article reports ranges of sequence parameters per series type.
Annotations
Series types were labelled by humans. Liver masks were drawn slice by slice in OsiriX on axial portal venous and precontrast fat-suppressed T1w, in-phase and opposed-phase series, by an abdominal radiologist or one of two research fellows whose work the radiologist checked and corrected. Major portal vein branches and the inferior vena cava are excluded. Masks are binary DICOM stacks matching the image series.
Known limitations
- Each liver was segmented by a single reader, so no inter-rater estimate exists.
- Clinical images include motion and susceptibility artifacts; cirrhotic liver shapes differ from healthy livers.
- No lesion labels, and MRI is the only modality.
- The CC BY-NC-ND 4.0 option rules out commercial use and sharing of derived data; a separate Duke license is needed for commercial use.
Cohort
Aggregate numbers from the sources below. Bars are relative to the 105 subjects.
Sex
- Female 29 28%
- Male 76 72%
Patients and Image Acquisition in Macdonald et al. 2023, Radiology Artificial Intelligence (data resource article)
Condition
Groups can overlap
- Liver cirrhosis 87 83%
Patients and Image Acquisition in Macdonald et al. 2023, Radiology Artificial Intelligence (data resource article)
Scanner vendor
- Siemens Healthineers 96 91%
- GE HealthCare 9 9%
Patients and Image Acquisition in Macdonald et al. 2023, Radiology Artificial Intelligence (data resource article)
Age
range 30 to 80
No age bins reported.
Patients and Image Acquisition in Macdonald et al. 2023, Radiology Artificial Intelligence (data resource article)
Contrast / sequence
ScansGroups can overlap
- T1-weighted, contrast enhanced 668 31%
- T2-weighted 428 20%
- T1-weighted 220 10%
- Diffusion-weighted 113 5%
- ADC map 99 5%
Table in Macdonald et al. 2023, Radiology Artificial Intelligence (data resource article)
Field strength
- 1.5 T 54 51%
- 3 T 51 49%
Patients and Image Acquisition in Macdonald et al. 2023, Radiology Artificial Intelligence (data resource article)
License and access
Our reading of the license, not legal advice. Before you use the data, read the original license and confirm that your use is allowed. We take no responsibility for how you use a dataset. Full disclaimer
A research proposal is reviewed and approved
Files are restricted on Zenodo. Request access through the record's form, giving your affiliation and a short description of the intended use; Duke University reviews the request.
Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
Share the unchanged data with credit for non-commercial purposes. You may not share anything derived from it, and Creative Commons advises against training models on it.
Requesters choose between CC BY-NC-ND 4.0 and a custom license negotiated with the Duke Office for Translation & Commercialization, which can allow commercial use. Modifications contributed back must have their copyright assigned to Duke University.
What you can do
- No
- Not stated
- No
- Conditional
- Yes
What you can share
- Conditional
- No
- No
What you must do
- Yes
- Share alike No
- No
- No
- Manuscript review No
- Release code No
- Return results No
- Delete after use No
Limits
- No
- Location limits No
Citation
Macdonald JA, Zhu Z, Konkel B, Mazurowski MA, Wiggins WF, Bashir MR. Duke Liver Dataset: A Publicly Available Liver MRI Dataset with Liver Segmentation Masks and Series Labels. Radiology: Artificial Intelligence 5(5):e220275 (2023). doi:10.1148/ryai.220275
Sources
Every number on this page comes from one of these documents. Each chart names the table or page it is taken from. The raw numbers are in stats.csv.