AOMIC-ID1000
Amsterdam Open MRI Collection, ID1000 study
Brain MRI of healthy young Dutch adults with psychometric scores, collected to study individual differences in brain structure and function. 928 people aged 19 to 26 matched to the population's education level, each with structural, diffusion and movie-watching fMRI scans, in BIDS under CC0.
Overview
ID1000 is the largest of the three studies in the Amsterdam Open MRI Collection (AOMIC), built at the University of Amsterdam to support research on individual differences in brain structure and function. It pairs multimodal 3T brain MRI with demographics and psychometric scores of young adults from the general Dutch population. The data have been on OpenNeuro as ds003097 under a CC0 waiver since 2020 and are described in a 2021 Scientific Data paper.
Composition
The release contains 928 participants aged 19 to 26 (483 female, 445 male), drawn from 992 scanned people. Recruitment went through an agency and aimed to match the educational level distribution of the Dutch population, while the narrow age range limits ageing effects. Each person has up to three T1-weighted scans, three diffusion-weighted runs and one functional run recorded while watching an 11-minute compilation of scenes from the film Koyaanisqatsi, set to music and without a storyline. All 928 have T1w data, 925 have diffusion and 881 have the movie fMRI. Respiratory and cardiac traces accompany most fMRI runs. The participants table adds handedness, BMI, education, socio-economic background, intelligence (IST), personality (NEO-FFI), BIS/BAS, trait anxiety and religiosity.
Acquisition
All scans were acquired between 2010 and 2012 on one Philips 3T scanner (Intera generation) with a 32-channel head coil in Amsterdam. Structural images use a 3D fast-field echo sequence, diffusion runs a spin-echo EPI with one b0 and 32 directions at b=1000, and functional data a sequential gradient-echo EPI with a 2.2 s TR. Anatomical scans were defaced before release. The data are in BIDS with extensive derivatives: Fmriprep and Freesurfer outputs, MRIQC metrics, preprocessed diffusion with tensor maps, voxel-based morphometry maps and physiology-based noise regressors.
Annotations
There are no image annotations. Derivatives include automated tissue segmentations and cortical parcellations from Freesurfer and Fmriprep.
Known limitations
- Single site and single scanner, and an older scanner generation than the later AOMIC studies, with lower T1w data quality reported by the authors.
- Only healthy young adults; no clinical groups and almost no age variation.
- Ages are rounded to the nearest quarter year for privacy.
- The movie lacks a narrative, so the fMRI suits low-level visual analyses better than semantic ones.
- Gender identity and sexual attraction were asked only after the first 400 participants.
Cohort
Aggregate numbers from the sources below. Bars are relative to the 928 subjects.
Sex
- Female 483 52%
- Male 445 48%
From participants.tsv of ds003097 snapshot 1.2.1 (CC0), counted per row; ages from age, sex from sex
Contrast / sequence
Groups can overlap
- T1-weighted 928 100%
- Diffusion-weighted 925 100%
- BOLD fMRI 881 95%
From BIDS file tree of ds003097 snapshot 1.2.1 (CC0), raw NIfTI files under sub-*/ counted per suffix
Age
mean 22.9 ± 1.7, median 22.8, range 19 to 26
From participants.tsv of ds003097 snapshot 1.2.1 (CC0), counted per row; ages from age, sex from sex; Table 2 in Snoek et al. 2021, The Amsterdam Open MRI Collection, Scientific Data
Age by sex
Reported cross table. Missing cells were not published (fewer than 10 or not reported).
- 48320-29443
From participants.tsv of ds003097 snapshot 1.2.1 (CC0), counted per row; ages from age, sex from sex
Contrast combinations
How many subjects have exactly each set of contrasts.
| T1w | dwi | bold | Subjects with exactly this set |
|---|---|---|---|
878 | |||
47 | |||
3 |
From BIDS file tree of ds003097 snapshot 1.2.1 (CC0), raw NIfTI files under sub-*/ counted per suffix
License and access
Our reading of the license, not legal advice. Before you use the data, read the original license and confirm that your use is allowed. We take no responsibility for how you use a dataset. Full disclaimer
Download without an account
Creative Commons Zero 1.0 Universal
Public domain dedication. Do anything with the data, including commercial use, without asking and without having to give credit.
dataset_description.json of snapshot 1.2.1 states "License" CC0.
What you can do
- Yes
- Yes
- Yes
- Yes
- Yes
What you can share
- Yes
- Yes
- Yes
What you must do
- No
- Share alike No
- No
- No
- Manuscript review No
- Release code No
- Return results No
- Delete after use No
Limits
- No
- Location limits No
Citation
Snoek L, van der Miesen MM, Beemsterboer T, van der Leij A, Eigenhuis A, Scholte HS. The Amsterdam Open MRI Collection, a set of multimodal MRI datasets for individual difference analyses. Scientific Data 8, 85 (2021). doi:10.1038/s41597-021-00870-6
Sources
Every number on this page comes from one of these documents. Each chart names the table or page it is taken from. The raw numbers are in stats.csv.
- Snoek et al. 2021, The Amsterdam Open MRI Collection, Scientific Data paper
- OpenNeuro ds003097 snapshot 1.2.1 (dataset_description.json, CHANGES and snapshot size) website
- participants.tsv of ds003097 snapshot 1.2.1 (CC0), counted per row; ages from age, sex from sex computed
- BIDS file tree of ds003097 snapshot 1.2.1 (CC0), raw NIfTI files under sub-*/ counted per suffix computed