ANDES schizophrenia MRI (six Latin American cities)
Latin American Network for the Study of Early Psychosis (ANDES), multi-site structural MRI sample
T1-weighted brain MRI of 334 patients with schizophrenia and 262 healthy controls from six cities in Argentina, Brazil, Chile, Colombia and Mexico, pooled by the ANDES network, with neighbourhood income and homicide rates. Shared on request only.
Overview
The ANDES network (Latin American Network for the Study of Early Psychosis) is a consortium of psychosis research groups from Argentina, Bolivia, Brazil, Chile, Colombia and Mexico, coordinated from the Pontificia Universidad Católica de Chile. Six of its imaging groups pooled structural brain MRI of people with schizophrenia and healthy controls to study how neighbourhood poverty and violence relate to grey matter volume. This entry covers that pooled sample, including the Santiago (Chile) site, as described by Crossley et al. (2021).
Composition
The analysis included 334 patients with schizophrenia or schizophreniform disorder under 50 years of age and 262 healthy controls, from seven samples in Buenos Aires, Porto Alegre, São Paulo, Santiago, Medellín and Mexico City (two samples). Mean age was 29.4 years in patients and 28 in controls. The Santiago site contributed 52 inpatients aged 15 to 25 with a first episode of non-affective psychosis and 49 controls; Mexico City also recruited first-episode, antipsychotic-naive patients, and the other sites recruited chronic outpatients. Each participant has the average household income and homicide rate of their neighbourhood, taken from public government statistics (in Mexico, family income from hospital records).
Acquisition
Each site acquired a 3D T1-weighted scan on its own scanner and protocol: GE 3 T in Buenos Aires and Mexico City, Philips Ingenia 3 T in Santiago and Medellín, Philips Achieva 1.5 T in Porto Alegre and Siemens Magnetom Sonata 1.5 T in São Paulo. The supplement lists voxel size, TI, TE, TR and flip angle per site. The authors segmented the images with SPM12, built a DARTEL template, normalised to MNI space and harmonised the grey matter maps across scanners with ComBat.
Annotations
No image annotations. Labels are diagnosis, age, gender, symptom scores, illness duration, antipsychotic dose and the neighbourhood income and violence measures.
Known limitations
- Not public. The data are available from the corresponding author on reasonable request, and each site's senior author must give permission. No terms are published.
- Sex counts are given only as percentages, and per-site counts of scans per scanner are not reported separately for the two Mexico City samples.
- Inclusion criteria, diagnostic instruments and illness stage differ between sites.
Cohort
Aggregate numbers from the sources below. Bars are relative to the 596 subjects.
Modality
subjects
- MRI 596 100%
Contrast / sequence
subjects, values can overlap
- T1-weighted 596 100%
Condition
subjects, values can overlap
- Schizophrenia 334 56%
- Healthy control 262 44%
Scanner vendor
subjects
- Philips 233 39%
- GE HealthCare 197 33%
- Siemens Healthineers 166 28%
Field strength
subjects
- 3 T 347 58%
- 1.5 T 249 42%
Country
subjects
- Brazil 249 42%
- Mexico 116 19%
- Chile 101 17%
- Argentina 81 14%
- Colombia 49 8%
License and access
Our reading of the license, not legal advice. Before you use the data, read the original license and confirm that your use is allowed. We take no responsibility for how you use a dataset. Full disclaimer
Ask the authors or the data holder. No published process or terms, and access is at their discretion
The data availability statement says the data are available from the corresponding author (Nicolas A. Crossley), subject to permission from the senior author of each site, upon reasonable request.
No published license or data use terms
The data holder has published no license and no data use terms. Any use, sharing or commercial right has to be agreed with the data holder, and nothing can be assumed to be allowed. Default copyright and data protection law still apply.
The paper's data availability statement gives no terms beyond a reasonable request and per-site permission. The ANDES network page cited in the paper (www.cyted.org/redes/ANDES) and the CYTED network page return 404.
What you can do
- Commercial use Not stated
- Not stated
- Train ML models Not stated
- Create derived data Not stated
- Publish results Not stated
What you can share
- Share the data Not stated
- Share derived data Not stated
- Share trained models Not stated
What you must do
- Cite or credit Not stated
- Share alike Not stated
- Sign an agreement Not stated
- Ethics approval Not stated
- Manuscript review Not stated
- Release code Not stated
- Return results Not stated
- Delete after use Not stated
Limits
- No re-identification Not stated
- Location limits Not stated
Citation
Crossley NA, Zugman A, Reyes-Madrigal F, Czepielewski LS, Castro MN, Diaz-Zuluaga AM, Pineda-Zapata JA, Reckziegel R, Gadelha A, Jackowski A, Noto C, Alliende LM, Iruretagoyena B, Ossandon T, Ramirez-Mahaluf JP, Castañeda CP, Gonzalez-Valderrama A, Nachar R, León-Ortiz P, Undurraga J, López-Jaramillo C, Guinjoan SM, Gama CS, de la Fuente-Sandoval C, Bressan RA, ANDES Network. Structural brain abnormalities in schizophrenia in adverse environments: examining the effect of poverty and violence in six Latin American cities. The British Journal of Psychiatry 218(2), 112-118 (2021). doi:10.1192/bjp.2020.143
All numbers
Every number on this page, as stored in stats.csv, with its source.
| Measure | Breakdown | Value | Source |
|---|---|---|---|
| Subjects | total 334 patients with schizophrenia and 262 healthy controls | 596 | crossley2021 Results; Table 1 |
| Subjects | modality=MR | 596 | crossley2021 Table 1 |
| Subjects | contrast=T1w T1-weighted images acquired at every site | 596 | crossley2021 Method: Preprocessing of images |
| Subjects | condition=schizophrenia diagnosis of schizophrenia or schizophreniform disorder under age 50; site inclusion criteria in Table S1 of the supplement | 334 | crossley2021 Table 1 |
| Subjects | condition=healthy | 262 | crossley2021 Table 1 |
| Mean age | condition=schizophrenia | 29.4 | crossley2021 Table 1 |
| Age SD | condition=schizophrenia | 9.4 | crossley2021 Table 1 |
| Mean age | condition=healthy | 28 | crossley2021 Table 1 |
| Age SD | condition=healthy | 8.3 | crossley2021 Table 1 |
| Subjects | country=AR Buenos Aires: 37 patients and 44 controls | 81 | crossley2021 Table 1 |
| Subjects | country=BR sum of the two disjoint Brazilian sites: Porto Alegre (40 patients, 43 controls) and São Paulo (115 patients, 51 controls) | 249 | crossley2021 Table 1 |
| Subjects | country=CL Santiago: 52 patients and 49 controls; patients were inpatients aged 15 to 25 with a first episode of non-affective psychosis (Table S1) | 101 | crossley2021 Table 1 |
| Subjects | country=CO Medellín: 28 patients and 21 controls | 49 | crossley2021 Table 1 |
| Subjects | country=MX Mexico City, two samples: 62 patients and 54 controls | 116 | crossley2021 Table 1 |
| Subjects | country=AR;condition=schizophrenia | 37 | crossley2021 Table 1 |
| Subjects | country=AR;condition=healthy | 44 | crossley2021 Table 1 |
| Subjects | country=BR;condition=schizophrenia sum of Porto Alegre (40) and São Paulo (115) | 155 | crossley2021 Table 1 |
| Subjects | country=BR;condition=healthy sum of Porto Alegre (43) and São Paulo (51) | 94 | crossley2021 Table 1 |
| Subjects | country=CL;condition=schizophrenia | 52 | crossley2021 Table 1 |
| Subjects | country=CL;condition=healthy | 49 | crossley2021 Table 1 |
| Subjects | country=CO;condition=schizophrenia | 28 | crossley2021 Table 1 |
| Subjects | country=CO;condition=healthy | 21 | crossley2021 Table 1 |
| Subjects | country=MX;condition=schizophrenia | 62 | crossley2021 Table 1 |
| Subjects | country=MX;condition=healthy | 54 | crossley2021 Table 1 |
| Subjects | vendor=ge Buenos Aires (GE 3 T, 81) and both Mexico City samples (GE Signa HDxt 3 T, 116); site counts from Table 1 of the paper | 197 | crossley2021-supp Table S1 |
| Subjects | vendor=philips Santiago (Philips Ingenia 3 T, 101), Medellín (Philips Ingenia 3 T, 49) and Porto Alegre (Philips Achieva 1.5 T, 83); site counts from Table 1 of the paper | 233 | crossley2021-supp Table S1 |
| Subjects | vendor=siemens São Paulo (Siemens Magnetom Sonata 1.5 T); site count from Table 1 of the paper | 166 | crossley2021-supp Table S1 |
| Subjects | field_strength=3 Buenos Aires, Santiago, Medellín and Mexico City; site counts from Table 1 of the paper | 347 | crossley2021-supp Table S1 |
| Subjects | field_strength=1.5 Porto Alegre and São Paulo; site counts from Table 1 of the paper | 249 | crossley2021-supp Table S1 |
Sources
The keys used in the table above.
- crossley2021 Crossley et al. 2021, The British Journal of Psychiatry paper
- crossley2021-supp Crossley et al. 2021, The British Journal of Psychiatry, Supplementary Information paper