AHEAD raw MP2RAGE-ME
Quantitative motion-corrected 7T sub-millimeter raw MRI database of the adult lifespan
Raw multi-coil brain k-space of an ultra-high-field multi-echo MP2RAGE scan in adults across the life span, with coil sensitivity maps, for reconstruction and quantitative T1, T2* and susceptibility mapping research. 7 T, fat-navigator motion corrected, defaced per coil.
Overview
Raw scanner data from the Amsterdam Ultra-high field adult lifespan database (AHEAD). Where the main AHEAD release shares reconstructed quantitative maps, this record holds the multi-coil k-space of the MP2RAGE-ME acquisition and the matching coil sensitivity maps, so that groups can test their own reconstruction, parallel imaging and quantitative mapping methods on 7 T data from adults of all ages.
Composition
The release covers 77 adults. A demographics file gives sex and age decade only: 43 women and 34 men, spread from the 20s to the 80s, with the largest groups in their 20s and 70s. The main AHEAD paper describes a larger set of 105 scans of participants aged 18 to 80; the record does not explain which of them were included here. No clinical or cognitive variables are part of this record.
Acquisition
All data come from one MP2RAGE-ME protocol on a Philips Achieva 7T, run with 32 receive channels at 0.7 mm isotropic resolution. The sequence records a first inversion at one echo and a second inversion at four echoes, which allows T1, T2* and susceptibility maps from a single scan. Each subject has five k-space files, one per inversion and echo, stored in the ISMRMRD HDF5 format with the scanner parameters inside, plus one HDF5 file of complex coil sensitivities. Head motion was corrected with fat navigators. To meet GDPR rules, faces were removed separately for each coil element in the image domain. A MATLAB example script for reading the files is included. The whole record is about 2.15 TB.
Known limitations
- Ages are given only as decades, not years.
- The record states no diagnoses or inclusion criteria; see the AHEAD paper for the recruitment of the cohort.
- Defacing per coil changes the raw signal near the face, which matters for methods that use the full field of view.
Cohort
Aggregate numbers from the sources below. Bars are relative to the 77 subjects.
Sex
- Female 43 56%
- Male 34 44%
Contrast / sequence
Groups can overlap
- MP2RAGE 77 100%
- Multi-echo gradient echo 77 100%
mp2rageme_<id>_inv1_te1.h5 and inv2_te1.h5 files, mp2rageme_<id>_inv2_te1..te4.h5 files in File listing of the DataverseNL record (CC BY 4.0) and the ISMRMRD XML header of mp2rageme_001_inv1_te1.h5
Age
AgeDecade in demographics.csv of the DataverseNL record (CC BY 4.0), columns Sex and AgeDecade, one row per subject
Field strength
- 7 T 77 100%
README.txt Main sequence parameters in DataverseNL record doi:10.34894/IHZGQM, V1 (description, README.txt and file listing)
Contrast combinations
How many subjects have exactly each set of contrasts.
| MEGRE | MP2RAGE | Subjects with exactly this set |
|---|---|---|
77 |
mp2rageme_<id>_*.h5 files in File listing of the DataverseNL record (CC BY 4.0) and the ISMRMRD XML header of mp2rageme_001_inv1_te1.h5
License and access
Our reading of the license, not legal advice. Before you use the data, read the original license and confirm that your use is allowed. We take no responsibility for how you use a dataset. Full disclaimer
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Creative Commons Attribution 4.0 International
Use, share and adapt the data for any purpose, including commercial use, as long as you credit the creators.
What you can do
- Yes
- Yes
- Yes
- Yes
- Yes
What you can share
- Yes
- Yes
- Yes
What you must do
- Yes
- Share alike No
- No
- No
- Manuscript review No
- Release code No
- Return results No
- Delete after use No
Limits
- No
- Location limits No
Citation
Caan M. Quantitative motion-corrected 7T sub-millimeter raw MRI database of the adult lifespan. DataverseNL, V1 (2022). https://doi.org/10.34894/IHZGQM. The record also asks users to cite Alkemade et al., NeuroImage 2020 (doi:10.1016/j.neuroimage.2020.117200), Bazin et al., NeuroImage 2020 (doi:10.1016/j.neuroimage.2020.117227) and Caan et al., Hum Brain Mapp 2019 (doi:10.1002/hbm.24490).
Sources
Every number on this page comes from one of these documents. Each chart names the table or page it is taken from. The raw numbers are in stats.csv.
- DataverseNL record doi:10.34894/IHZGQM, V1 (description, README.txt and file listing) data
- demographics.csv of the DataverseNL record (CC BY 4.0), columns Sex and AgeDecade, one row per subject computed
- File listing of the DataverseNL record (CC BY 4.0) and the ISMRMRD XML header of mp2rageme_001_inv1_te1.h5 computed
- Alkemade et al. 2020 (abstract), The Amsterdam Ultra-high field adult lifespan database (AHEAD), NeuroImage 222, 117200 paper